Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01017 ATGAGTTCTTCTAATGGTGGTGTGCCGCCGGGGTTTCGATTTCATCCGACCGATGAAGAGCTACTTCATTACTACTTGAAGAAGAAGGTTTCTTTTCAAAAATTTGATATGGATGTTATTAGAGAGGTGGATTTGAACAAGATGGAACCTTGGGACTTGCAAGAAAAATGTAAGATTGGATCAACACCACAAAACGAGTGGTACTTTTTCAGTCACAAGGATAGAAAGTATCCAACAGGGTCAAGGACTAATAGAGCAACAAATGCTGGGTTTTGGAAAGCAACAGGAAGAGACAAATGTATTAGGAATACTTATAAGAAGATTGGAATGAGAAAGACTCTTGTGTTTTACAAAGGTAGAGCTCCTCATGGACAAAAGACTGATTGGATTATGCATGAATATCGTCTTGAAGATGGCAATGATCCTACCAATGAAGATGGTTGGGTAGTATGCAGGGTATTCAAGAAGAAGAACTTATTCAAGATAGGAAGTGAAGGTGGATCCACACACAATCAAGATCAACAAATGAACAATATTCCATCAAACAATCCACGTTCCTTCATGCAAAGAGAAAATCAATACTTACTACATCAACAACATCAAAACCATTCAAGGAACCTATCCGGTTTCGAGCTCGAAAAACCCGAACTCGGTCTCCATTATCAACACTTGCAAAACTCCCAATACTCACTCTATCATTCCCAATCCCAACCTCAACCTCAACCTCTACAAGTTAACTTTGATTACTCATATGCATCATCTTTACAATCAGAACAACCTATTACAGTTAAACAACTTATGACAAACCCTAGAGATTGTGAGAGTGGTAGCGATGGTTTGAGATATCAAGTTTCAGAATCTGGCATTGAAGTTGGTTCATGTGAACCACCTCAAGAAATGGGTGTTGGAAGAAGTGAAGGAATGAATGAATGGGGTATGCTTGATAGGCTAGTGAATGAAGACTCAACAAAAGAGGCCACTAGGTTTGAGGATGCTAATCCTCATCAAATCAATCAATTATCATTGAGGGGAGAGATGGATTTTTGGGGCTATGGAAAACAATGA 1065 0.3897 MSSSNGGVPPGFRFHPTDEELLHYYLKKKVSFQKFDMDVIREVDLNKMEPWDLQEKCKIGSTPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNTYKKIGMRKTLVFYKGRAPHGQKTDWIMHEYRLEDGNDPTNEDGWVVCRVFKKKNLFKIGSEGGSTHNQDQQMNNIPSNNPRSFMQRENQYLLHQQHQNHSRNLSGFELEKPELGLHYQHLQNSQYSLYHSQSQPQPQPLQVNFDYSYASSLQSEQPITVKQLMTNPRDCESGSDGLRYQVSESGIEVGSCEPPQEMGVGRSEGMNEWGMLDRLVNEDSTKEATRFEDANPHQINQLSLRGEMDFWGYGKQ 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01017 354 ProSiteProfiles NAC domain profile. 8 156 IPR003441 GO:0003677|GO:0006355
Trre8g01017 354 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 235 - -
Trre8g01017 354 Pfam No apical meristem (NAM) protein 9 136 IPR003441 GO:0003677|GO:0006355
Trre8g01017 354 SUPERFAMILY NAC domain 7 156 IPR036093 GO:0003677|GO:0006355
Trre8g01017 354 Gene3D NAC domain 17 161 IPR036093 GO:0003677|GO:0006355
Trre8g01017 354 FunFam NAC domain-containing protein 17 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01017 Trre-Chr8 7261535 7265526 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01017 1 350 NAC Transcription Factor Family AT1G33280 55.278 2.91e-127 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre8g01017 NAM 2e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01017 - - gmx:100804181 555.829