Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01016 ATGAAACGAAGAGTCACTGCCGATCTTTATGATTTTCTCACTTTCCCTCCCGTCAGCGACAACTCTGCCGCTGTTCCTTTTCGTTCCGATGTTCATCGGTTTGTCTCTGAACATGCTCGTGTTACTTTTCCTCCTTCTCTTTTTTCGTCTCTGATGACGTGGCAGATCCTTTTTCGTATTGGTGATTTTGGTGTTGGTTCTGATCTTTCAACTGCTATGGTTGCTCTTGACATTGTTGAAGAGGATGTTACTCGGTCTCGTAGTTCGGTTTATTGTGACCAGTGCCGAGTTGTTGGATGGAGTGCTCATCCTGTATGCCGAAAGCGATATCACTTCATAATAAGGTCTGCAAGTGATTCTATCGAAGCATACCAAAGACCTTGTTCAAAGTGTGAAACTCCCGTCCCCTTATCTGAAGCAAGGTGTAAGGTGTGCAACTTTGACATCTCCATTGATGATCTTGAGGATTGTGTGTATCATCAAATAGAAGAGAACACTCATCTTCTGCATGGAGTTATCCACTCCAATGGTTATGGTCACTTGCTTACTCTTAATGGAAGAGAAGGTGGCTCGATGCTTCTCTCTGGATCTGATATCATGGGATTCTGGGATAGGCTATGTGCTTCAATTTCTGTTAGGAAGGTTAGTGTGATGGATTTGTCAAAGAAATTTGGTCTGGATTATCGTTTGCTTCATTCAATTGCAAAAGGGCATTCATGGTATGGCAATTGGGGTTATGAATTTGGGACTGGCAGCTATGCTCTTACCAAAGATGCTTACAATAAGGCAGTTGATAGCTTGTCCAATATGCCCTTGTCCTCGTTTTTATTCCAGGACAGAGGACCTCCACACCATGTGCATTCCGTTATTTCTCTTTACCAGTCTTTGGCAGAAACTGAACTTCTCACAATGAAAGATCTCTTCTCCTTTTTGTTGGAATTGGTTCATAAATTTCGTAAGCCCAGGAGTGCAAAGACTGCCAAACAGCATGAATATGCTGGTCCATGTAATTTATTATGCGCATGGACTAGAAATGATGTCGAAGATGTTCAACAAGCTTTGATCAAGGTATTGCTTGTATCAGGTGCTTGTAATGAGGCCAAATGGGCGACAAGGCAAACTCTCAAGGGGGCAGTAAGTAGGCTTGGATCTCCAGAGCTAATAGACTACTGTCTTAAGCATTTGCAAGGGAAAATAGCTGCAAATGGATTGATAGTTTGTTCGCGATGCAATCCCACATCCAGTGCTATCGAATTCAGATTGGGAAATTTGACTAATGGATTTAGCTCAAATTCAAGCTATCCATCAGAAGAGCAAGTGATTTCCGATTTGACATTCCTATTTAATTCCATTATTCACCCTGAAAAGATGATCAAATACAGACCTAAGGTTATTAGGAAAACAGTGGTTGATTCAGCCAGAAAGCTTCTTGACTGTAAGCAGTTTATGAAGGATTACAAAATTGAACAAGTGTCCACAGAACTGCCTTCAGCTATTAAGCTCTGGTGTCATGTGGAGCTTTCTGATCAACCTAAAGATGACCAGCCATCACCACCGCCAGAGCTGATTGTGTTGCCGTTGGATGCCACAGCTGCTGATCTCAAGAATGAAGCCACTAAAGCTTTCCAATTGGTATATGCAATGTACAAAAAGTTTGAAGCTCAAGAACTTCTAGGATTTGGTTCAATCAATGATTTGCTAACCGTAAAATTCCTTCTCGGAACAAGTGGATCAGTTGAAATTCTAGGAAAAAGCCCAGCCAAACATGGCTTAAGCCGATTCCGAAAGGAGCGTGGAACTGAAGAATGGAAAGTTGATTGCACATGTGGTGCTAAGGATGATGATGGAGAAAAAATGTTAGCATGTGATACCTGTGGCATCTGGCAGCATACCAGATGTGCTGGAATTGGTAGTTCTGATGATGGCATGCCTTCCAAGTTTGTATGTATGAAGTGTGTTAAGACTTGTAAATTGAACGCATCCTGCAGAGATGAAAATGCTGCTGCTTGTAATATAAATGTAAATTTTGGTGTACGATGA 2040 0.4172 MKRRVTADLYDFLTFPPVSDNSAAVPFRSDVHRFVSEHARVTFPPSLFSSLMTWQILFRIGDFGVGSDLSTAMVALDIVEEDVTRSRSSVYCDQCRVVGWSAHPVCRKRYHFIIRSASDSIEAYQRPCSKCETPVPLSEARCKVCNFDISIDDLEDCVYHQIEENTHLLHGVIHSNGYGHLLTLNGREGGSMLLSGSDIMGFWDRLCASISVRKVSVMDLSKKFGLDYRLLHSIAKGHSWYGNWGYEFGTGSYALTKDAYNKAVDSLSNMPLSSFLFQDRGPPHHVHSVISLYQSLAETELLTMKDLFSFLLELVHKFRKPRSAKTAKQHEYAGPCNLLCAWTRNDVEDVQQALIKVLLVSGACNEAKWATRQTLKGAVSRLGSPELIDYCLKHLQGKIAANGLIVCSRCNPTSSAIEFRLGNLTNGFSSNSSYPSEEQVISDLTFLFNSIIHPEKMIKYRPKVIRKTVVDSARKLLDCKQFMKDYKIEQVSTELPSAIKLWCHVELSDQPKDDQPSPPPELIVLPLDATAADLKNEATKAFQLVYAMYKKFEAQELLGFGSINDLLTVKFLLGTSGSVEILGKSPAKHGLSRFRKERGTEEWKVDCTCGAKDDDGEKMLACDTCGIWQHTRCAGIGSSDDGMPSKFVCMKCVKTCKLNASCRDENAAACNINVNFGVR 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01016 679 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 3 657 - -
Trre8g01016 679 SUPERFAMILY FYVE/PHD zinc finger 600 656 IPR011011 -
Trre8g01016 679 Pfam PHD-finger 607 653 IPR019787 -
Trre8g01016 679 SMART PHD_3 606 653 IPR001965 -
Trre8g01016 679 ProSitePatterns Zinc finger PHD-type signature. 607 652 IPR019786 -
Trre8g01016 679 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 592 659 IPR013083 -
Trre8g01016 679 CDD PHD_MMD1_like 606 652 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01016 Trre-Chr8 7248266 7251029 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01016 74 652 PHD Transcription Factor Family AT5G22260 28.969 5.90e-82 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trre8g01016 PHD 1.8e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01016 K26271 - gmx:100780558 1028.47