Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01015 ATGGTTGTCAACGAAAGACCAACTAAGAGAATGAAACGAAGAGTCACTGCCGATCTTTATGATTTTCTCACTTTCCCTCCCGTCAGCGACAACTCTGCCGCTGTTCCTTTTCGTTCCGATGTTCATCGGTTTGTCTCTGAACATGCTCGTGTTACTTTTCCTCCTTCTCTTTTTTCGTCTCTGATGACGTGGCAGATCCTTTTTCGTATTGGTGATTTTGGTGTTGGTTCTGATCTTTCAACTGCTATGGTTGCTCTTGACATTGTTGAAGAGGATGTTACTCGGTCTCGTAGTTCGGTTTATTGTGACCAGTGCCGAGTTGTTGGATGGAGTGCTCATCCTGTATGCCGAAAGCGATATCACTTCATAATAAGGTCTGCAAGTGATTCTATCGAAGCATACCAAAGACCTTGTTCAAAGTGTGAAACTCCCGTCCCCTTATCTGAAGCAAGGTGTAAGGTGTGCAACTTTGACATCTCCATTGATGATCTTGAGGATTGTGTGTATCATCAAATAGAAGAGAACACTCATCTTCTGCATGGAGTTATCCACTCCAATGGTTATGGTCACTTGCTTACTCTTAATGGAAGAGAAGGTGGCTCGATGCTTCTCTCTGGATCTGATATCATGGGATTCTGGGATAGGCTATGTGCTTCAATTTCTGTTAGGAAGGTTAGTGTGATGGATTTGTCAAAGAAATTTGGTCTGGATTATCGTTTGCTTCATTCAATTGCAAAAGGGCATTCATGGTATGGCAATTGGGGTTATGAATTTGGGACTGGCAGCTATGCTCTTACCAAAGATGCTTACAATAAGGCAGTTGATAGCTTGTCCAATATGCCCTTGTCCTCGTTTTTATTCCAGGACAGAGGACCTCCACACCATGTGCATTCCGTTATTTCTCTTTACCAGTCTTTGGCAGAAACTGAACTTCTCACAATGAAAGATCTCTTCTCCTTTTTGTTGGAATTGGTTCATAAATTTCGTAAGCCCAGGAGTGCAAAGACTGCCAAACAGCATGAATATGCTGGTCCATGTAATTTATTATGCGCATGGACTAGAAATGATGTCGAAGATGTTCAACAAGCTTTGATCAAGGTATTGCTTGTATCAGGTGCTTGTAATGAGGCCAAATGGGCGACAAGGCAAACTCTCAAGGGGGCAGTAAGTAGGCTTGGATCTCCAGAGCTAATAGACTACTGTCTTAAGCATTTGCAAGGGAAAATAGCTGCAAATGGATTGATAGTTTGTTCGCGATGCAATCCCACATCCAGTGCTATCGAATTCAGATTGGGAAATTTGACTAATGGATTTAGCTCAAATTCAAGCTATCCATCAGAAGAGCAAGTGATTTCCGATTTGACATTCCTATTTAATTCCATTATTCACCCTGAAAAGATGATCAAATACAGACCTAAGGTTATTAGGAAAACAGTGGTTGATTCAGCCAGAAAGCTTCTTGACTGTAAGCAGTTTATGAAGGATTACAAAATTGAACAAGTGTCCACAGAACTGCCTTCAGCTATTAAGCTCTGGTGTCATGTGGAGCTTTCTGATCAACCTAAAGATGACCAGCCATCACCACCGCCAGAGCTGATTGTGTTGCCGTTGGATGCCACAGCTGCTGATCTCAAGAATGAAGCCACTAAAGCTTTCCAATTGGTATATGCAATGTACAAAAAGTTTGAAGCTCAAGAACTTCTAGGATTTGGTTCAATCAATGATTTGCTAACCGTAAAATTCCTTCTCGGAACAAGTGGATCAGTTGAAATTCTAGGAAAAAGCCCAGCCAAACATGGCTTAAGCCGATTCCGAAAGGAGCGTGGAACTGAAGAATGGAAAGTTGATTGCACATGTGGTGCTAAGGATGATGATGGAGAAAAAATGTTAGCATGTGATACCTGTGGCATCTGGCAGCATACCAGATGTGCTGGAATTGGTAGTTCTGATGATGGCATGCCTTCCAAGTTTGTATGTATGAAGTGTGTTAAGACTTGTAAATTGAACGCATCCTGCAGAGATGAAAATGCTGCTGCTTGTAATATAAATGTAAATTTTGGTGTACGATGA 2070 0.4169 MVVNERPTKRMKRRVTADLYDFLTFPPVSDNSAAVPFRSDVHRFVSEHARVTFPPSLFSSLMTWQILFRIGDFGVGSDLSTAMVALDIVEEDVTRSRSSVYCDQCRVVGWSAHPVCRKRYHFIIRSASDSIEAYQRPCSKCETPVPLSEARCKVCNFDISIDDLEDCVYHQIEENTHLLHGVIHSNGYGHLLTLNGREGGSMLLSGSDIMGFWDRLCASISVRKVSVMDLSKKFGLDYRLLHSIAKGHSWYGNWGYEFGTGSYALTKDAYNKAVDSLSNMPLSSFLFQDRGPPHHVHSVISLYQSLAETELLTMKDLFSFLLELVHKFRKPRSAKTAKQHEYAGPCNLLCAWTRNDVEDVQQALIKVLLVSGACNEAKWATRQTLKGAVSRLGSPELIDYCLKHLQGKIAANGLIVCSRCNPTSSAIEFRLGNLTNGFSSNSSYPSEEQVISDLTFLFNSIIHPEKMIKYRPKVIRKTVVDSARKLLDCKQFMKDYKIEQVSTELPSAIKLWCHVELSDQPKDDQPSPPPELIVLPLDATAADLKNEATKAFQLVYAMYKKFEAQELLGFGSINDLLTVKFLLGTSGSVEILGKSPAKHGLSRFRKERGTEEWKVDCTCGAKDDDGEKMLACDTCGIWQHTRCAGIGSSDDGMPSKFVCMKCVKTCKLNASCRDENAAACNINVNFGVR 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01015 689 ProSitePatterns Zinc finger PHD-type signature. 617 662 IPR019786 -
Trre8g01015 689 SMART PHD_3 616 663 IPR001965 -
Trre8g01015 689 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 12 667 - -
Trre8g01015 689 SUPERFAMILY FYVE/PHD zinc finger 610 666 IPR011011 -
Trre8g01015 689 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 602 669 IPR013083 -
Trre8g01015 689 Pfam PHD-finger 617 663 IPR019787 -
Trre8g01015 689 CDD PHD_MMD1_like 616 662 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01015 Trre-Chr8 7248266 7251059 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01015 84 662 PHD Transcription Factor Family AT5G22260 29.126 5.83e-82 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trre8g01015 PHD 1.8e-09 CL0390