Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01008 ATGTCCATCACAAAGGAATCTCAAGCTCAAGCTCAAGTTCAAGCAGAATCTAAACCCGGCTCAACAACAATACGCGGCTCCAAAAAACGTGATTCTGCATTCTACGGAGTGCGGAAACGTACATGGGGGCGCTATGTTTCGGAGATAAGGCTACCGGGTCAAAAAACTCGAATATGGCTTGGATCATTTGAGTCAGCTGAAATGGCGGCGCGTGCTTATGACTCGGCGGCTTATTTCTTAAAAGGTAGCTCTGCTAGTCTTAATTTTCCTAAAGATGTTGAATTTCTACCACGTCCTATTTCTTCGGCAAGAAGAGATATTCAATTGGCGGCGGCTAAAGCGGCTCATCAACCAAGTCGAAGCCGCCACCAACAAGAAGATGTACCTACAATTACACACTCTTCTTCCAATGAAACAAAAATGAATGAAAATGAAAATGGTAATAATATCAATAGTGCTAATAACAATATTGATATTGATCATCATGATGTTAATGATTTTTCCATTGATATGATGGAGTGGTGGAAAGAAGAAGAGTATGCCACTACGGCGTCGTTTTGGGATGTGAAAGATGCTCCTTTGATGAGTCCAACAAGGGTGGGGTCTACTTTTGGAGATATGATGACATGGAACGAAGTGTTCAATTTCAATGATGATATTCTAGCGATGGTACAAGGAAATAATAACTCTTTAGTATATGTACCATAG 708 0.4082 MSITKESQAQAQVQAESKPGSTTIRGSKKRDSAFYGVRKRTWGRYVSEIRLPGQKTRIWLGSFESAEMAARAYDSAAYFLKGSSASLNFPKDVEFLPRPISSARRDIQLAAAKAAHQPSRSRHQQEDVPTITHSSSNETKMNENENGNNINSANNNIDIDHHDVNDFSIDMMEWWKEEEYATTASFWDVKDAPLMSPTRVGSTFGDMMTWNEVFNFNDDILAMVQGNNNSLVYVP 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01008 235 SMART rav1_2 33 96 IPR001471 GO:0003700|GO:0006355
Trre8g01008 235 FunFam Ethylene-responsive transcription factor 2 32 91 - -
Trre8g01008 235 SUPERFAMILY DNA-binding domain 32 91 IPR016177 GO:0003677
Trre8g01008 235 MobiDBLite consensus disorder prediction 112 155 - -
Trre8g01008 235 ProSiteProfiles AP2/ERF domain profile. 33 90 IPR001471 GO:0003700|GO:0006355
Trre8g01008 235 CDD AP2 32 90 IPR001471 GO:0003700|GO:0006355
Trre8g01008 235 PRINTS Ethylene responsive element binding protein signature 56 72 IPR001471 GO:0003700|GO:0006355
Trre8g01008 235 PRINTS Ethylene responsive element binding protein signature 34 45 IPR001471 GO:0003700|GO:0006355
Trre8g01008 235 Gene3D AP2/ERF domain 33 92 IPR036955 GO:0003700|GO:0006355
Trre8g01008 235 MobiDBLite consensus disorder prediction 128 155 - -
Trre8g01008 235 Pfam AP2 domain 35 82 IPR001471 GO:0003700|GO:0006355
Trre8g01008 235 MobiDBLite consensus disorder prediction 1 28 - -
Trre8g01008 235 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 14 160 - -
Trre8g01008 235 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01008 Trre-Chr8 7197526 7198233 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01008 6 108 AP2-EREBP Transcription Factor Family AT1G01250 51.456 8.69e-30 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Trre8g01008 AP2 1.1e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01008 K09286 - gmx:100783790 178.333