Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01004 ATGACTCCAGTTAATTTGGCAGGACAATTTGGTGACACAACATACACCAAAGTTTTTGTTGGAGGGTTAGCTTGGGAAACTCAAAAGGAAACTATGAAGAAATATTTTGAGCAATTTGGTGAGATCTTGGAAGCTGTTGTTATCACTGACAAAGCCACCGGAAGATCCAAAGGCTATGGTTTTGTTACTTTTCGTGAGCCTGATGCTGCTATGAGAGCTTGTGTGGATGCTGCTCCAATAATTGATGGTAGGAGAGCTAATTGCAATCTTGCTTCTTTGGGTGTCCAAAGATCTAAGCCTTCAACACCAAAGCATGGAGGAGGAGGGAGGAACTTTAGGGTAATGGGTTCTTTCCAGACAGGATTTGGAGGAGTGGGATCAGCTTTTCCTTCAGCTGCAACCTTCCCTCATTATGCCATCCAGCAAGGGATACCTTATAATGTTTATGGGTACTCTTCTTACTCACCGGATTACAGTTACCCTACGAGCTACTATGGTATGTACGGTGGAGCAACAGCACAGTACCCTGTATATGGAAATGGACCAGCTGGAGGGATGATGACTGGTGGTGCAGCAGCAGCTGCAGCATATTATCCTTATCTTCAGTATGGCGAAGGAACTGGCGCCGCAACAACCGGTGGCTACACATCGGGTCAAGGTTATGGTGTTAACTACCCACCTCAAGTGTTTCAATATTCTCCAATTGCTTCAACTGGTGGTTATGCTCAGCATTATGGAACACCCATTTCTCTTGCACCTTCTCCCGCTGCCCTGCCACCAGGCGTGACAATGGCTCTACAAGCTCCAATTCCTCATCGTTAG 822 0.4611 MTPVNLAGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPIIDGRRANCNLASLGVQRSKPSTPKHGGGGRNFRVMGSFQTGFGGVGSAFPSAATFPHYAIQQGIPYNVYGYSSYSPDYSYPTSYYGMYGGATAQYPVYGNGPAGGMMTGGAAAAAAYYPYLQYGEGTGAATTGGYTSGQGYGVNYPPQVFQYSPIASTGGYAQHYGTPISLAPSPAALPPGVTMALQAPIPHR 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01004 273 PANTHER BOULE-RELATED 6 241 - -
Trre8g01004 273 SUPERFAMILY RNA-binding domain, RBD 12 112 IPR035979 GO:0003676
Trre8g01004 273 Gene3D - 7 112 IPR012677 -
Trre8g01004 273 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 93 IPR000504 GO:0003723
Trre8g01004 273 SMART rrm1_1 17 89 IPR000504 GO:0003723
Trre8g01004 273 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 73 IPR000504 GO:0003723
Trre8g01004 273 CDD RRM_RBM24_RBM38_like 16 91 - -
Trre8g01004 273 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 10 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01004 Trre-Chr8 7165183 7173540 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01004 12 92 C2H2 Transcription Factor Family AT2G19380 43.210 1.05e-13 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01004 - - aip:107629746 430.254