Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01002 ATGGCTAAGATTTCCAATCCCTTTCAAATTTTCAACTTCATGATAATTCTATTACTCACAACATCATACTATATTTTCCCTCCATGTTTGTCTCTAACAATTGAAACACAAGCACTTCTTGATTTCAAAAACCATTTGAAAGACTCATTAAATACTTTAGCTTCATGGAATGAGTCAAACTCTCCATGCAACTTTCATGGAATTACATGTGATCCACTATCATTGAAAGTCATAGAAATCTCATTAGATGATAACTCGCTCTCCGGCGAAATTTTTTCGTCTATCTCAATTCTTAATAGCCTACAAGTTCTTTCATTACCAACCAATTCCATTTCCGGAAAACTTCCGTTAGAAGTAACCAAATTTATAAACCTCAAAGTCTTGAATCTATCGGGAAATGAGCTCGTTGGAGCTATTCCGGATATGTCTCGATTGAGAAACCTTCAAGTTCTTGATCTTTCGGCGAATTACTTTTCCGGTCAAATTCCGAGTTGGATAGGGAATCTCACGAGACTAGTTTCACTTGGTCTCGGCGAAAATCTTTACACTGAGAATGTCATACCAGAGAGTCTCGGAAATTTGAAGAACTTAACGTGGCTTTATCTACGCGGTTCTCATTTGACAGGAGAGATTCCAGAATCAATATATGAAATGGAAGCATTGGAGACTTTAGATATTTCAAGAAACAGGTTATCTGGTAAAATCTCAAGATCGATTTCGAGGCTGAAAAATATTTACAAAATTGAGTTGTTTTCGAATAATTTGGTAGGCGAAATACCAGAAGAACTCGCGAATTTAACGAATTTGCAAGAGATTGATCTTTCTGCAAACAACATGTTTGGTAAATTGCCTAAACAAATTGGTGATATGAAGAATTTAGTTGTTTTTCAACTCTATGATAACAACTTTTCTGGTGAAATTCCTGTTGGATTTGGTGATATGGAAAATCTCAAAGGTTTTTCGGTTTACAGAAACATGTTCAACGGAACGATACCAGAGAATTTCGGCCGATTTTCTCCAATTGAAAGTATTGACATATCAGAGAATCAATTTTCAGGTTTTTTTCCAAAGTACATGTGTGAAAAAAGAAAGTTGAAATTTTTGCTTGCATTGCAAAACAATTTCTCTGGAAATTTTTCTGATTCTTATGCTTTATGCAAATCACTTGAAAGATTAAGGATTAGTAGGAATTTTTTATCTGGAAAAATTCCTAAAGGTGTTTGGTCACTTCCTAATGCAAAAATAATTGATTTAGGTTTTAACAGTTTCAGTGGCGAAGTATCTTCCGATATCGGAAATTCAACGAGGTTAAGTGAGATTGTTTTGATGAACAACAAGTTTTCAGGTAAGGTTCCTTCACAATTTAAAAAATTGGTGAATTTGGAGAAACTTTATTTGAGTAACAATAATTTCACTGGTGAAATTCCACATGAAATTGGATTTTTAAAGCAATTATCCACTTTGCATTTGGAAGAAAATTCATTAACTGGTTTGATACCGAACGAACTAGGCCGTTGTTTGAGGCTGGTGGATTTGAATCTTGCTTGGAATAATTTATCAGGAAACATTCCAAATTCGTTTTCGCTTATGAGTTCTTTGAATTCTCTGAATTTGTCGGGAAACCAACTTACGGGTTGGATTCCTGAAAATTTAGAGAAAATGAAACTAAGCTCAGTGGATTTTTCTGATAATTTTCTTTCTGGTGGAATTCCATTTTGGATTTTTATCATTGGTGGAGAAAAGGCGTTTGTTGGAAACAAAGATTTGTGTGTTGAAAAAAATCCGAAAGCTTCGGTGAGTTCTGATTTGAAGATTTGTGATAAAGGTAATGGTCGTAGAAGAACGATCTTTGCTTATAAATATCTCTTGCTCTTTTTCATTGCTGCTATATTCGGCGCTGTGATTTTGATTGGTAGAAGCATTAAGAATCGAAGAGGAAAAAAGGTACAAAAGGAAGGACATGAAAAATGGAAACTAGCATCTTTCCACCAAGTGGATATTGATGCTGATGAAATAAGTCATTTGAAAGAAGATAATTTAATCGGCTACGGTGGTACCGGAAAGGTTTATCGAGTCGAATTGAAGAGAAACGGTGCACTGGTGGCCGTGAAGCAACTAGAGAAAGGGAATGATGTGAGGATTTTAGCCGCGGAAATAGAGATTTTAGGGAAAATTAGACATAAAAATATACTTAAACTTTATGCTTGTTTGCTTAAAGGAGAAACGAGTCTTTTAGTTTACGAGTATATGTCAAATGGTAATCTTTTTCAAGCTCTTCACAGAGAGATAAAAGACGAGAATGTCACATTTGATTGGAACCGAAGGTATAAAATCGCGTTGGGAGGAGCAAAAGGGATTTGCTATTTGCACCATGATTGTTCTCCACCTGTTATTCATAGGGATATAAAATCTAGCAATATTTTGCTTGATGAAGATTATGAAGCAAAAATTGCTGATTTTGGTGTTGCAAGGTTTGCAGAAAAATCTCAAATGGATTGTAGCTCTTTTGCCGGCACGCATGGTTATATTGCCCCAGAACTGGCTTATACAACTGAAATAACCGAAAAGTGTGATGTGTACAGCTTCGGAATTGTACTATTAGAGTTAGTATCTGGTCGCGAAGCTGTTGAAGAGGAATACGGTGAAGCAAAAGATATTGTTTATTGGGTTATGACCAATCTACATGACCGTGAAAGTGTACTCAACATTCTTGACGATAGAGTTGCATCAACACATTGTGTTGATGATATGATAAAAGTGTTGAAGATCGCTATTAAGTGCGCTACAAAGCTTCCAACTTTGCGTCCTACAATGCGAGATGTTGTTAAGATGCTTATTGATTCTGAACCTTGTAAGATGAAATCTCAAGGATGTGGTCCTGAGAAAGATGCAAGATCTTTTGTGTAG 2907 0.3557 MAKISNPFQIFNFMIILLLTTSYYIFPPCLSLTIETQALLDFKNHLKDSLNTLASWNESNSPCNFHGITCDPLSLKVIEISLDDNSLSGEIFSSISILNSLQVLSLPTNSISGKLPLEVTKFINLKVLNLSGNELVGAIPDMSRLRNLQVLDLSANYFSGQIPSWIGNLTRLVSLGLGENLYTENVIPESLGNLKNLTWLYLRGSHLTGEIPESIYEMEALETLDISRNRLSGKISRSISRLKNIYKIELFSNNLVGEIPEELANLTNLQEIDLSANNMFGKLPKQIGDMKNLVVFQLYDNNFSGEIPVGFGDMENLKGFSVYRNMFNGTIPENFGRFSPIESIDISENQFSGFFPKYMCEKRKLKFLLALQNNFSGNFSDSYALCKSLERLRISRNFLSGKIPKGVWSLPNAKIIDLGFNSFSGEVSSDIGNSTRLSEIVLMNNKFSGKVPSQFKKLVNLEKLYLSNNNFTGEIPHEIGFLKQLSTLHLEENSLTGLIPNELGRCLRLVDLNLAWNNLSGNIPNSFSLMSSLNSLNLSGNQLTGWIPENLEKMKLSSVDFSDNFLSGGIPFWIFIIGGEKAFVGNKDLCVEKNPKASVSSDLKICDKGNGRRRTIFAYKYLLLFFIAAIFGAVILIGRSIKNRRGKKVQKEGHEKWKLASFHQVDIDADEISHLKEDNLIGYGGTGKVYRVELKRNGALVAVKQLEKGNDVRILAAEIEILGKIRHKNILKLYACLLKGETSLLVYEYMSNGNLFQALHREIKDENVTFDWNRRYKIALGGAKGICYLHHDCSPPVIHRDIKSSNILLDEDYEAKIADFGVARFAEKSQMDCSSFAGTHGYIAPELAYTTEITEKCDVYSFGIVLLELVSGREAVEEEYGEAKDIVYWVMTNLHDRESVLNILDDRVASTHCVDDMIKVLKIAIKCATKLPTLRPTMRDVVKMLIDSEPCKMKSQGCGPEKDARSFV 968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01002 968 Gene3D Ribonuclease Inhibitor 32 182 IPR032675 -
Trre8g01002 968 Gene3D Phosphorylase Kinase; domain 1 639 749 - -
Trre8g01002 968 SMART LRR_typ_2 145 169 IPR003591 -
Trre8g01002 968 SMART LRR_typ_2 458 480 IPR003591 -
Trre8g01002 968 SMART LRR_typ_2 482 506 IPR003591 -
Trre8g01002 968 SMART LRR_typ_2 218 242 IPR003591 -
Trre8g01002 968 SMART LRR_typ_2 530 554 IPR003591 -
Trre8g01002 968 SMART LRR_typ_2 266 290 IPR003591 -
Trre8g01002 968 SUPERFAMILY L domain-like 58 309 - -
Trre8g01002 968 SUPERFAMILY RNI-like 248 568 - -
Trre8g01002 968 SUPERFAMILY Protein kinase-like (PK-like) 671 945 IPR011009 -
Trre8g01002 968 Gene3D Ribonuclease Inhibitor 316 601 IPR032675 -
Trre8g01002 968 FunFam Receptor-like protein kinase HSL1 296 599 - -
Trre8g01002 968 Pfam Leucine rich repeat 436 495 IPR001611 GO:0005515
Trre8g01002 968 Pfam Leucine rich repeat 146 207 IPR001611 GO:0005515
Trre8g01002 968 Pfam Leucine rich repeat N-terminal domain 35 71 IPR013210 -
Trre8g01002 968 Gene3D Ribonuclease Inhibitor 244 315 IPR032675 -
Trre8g01002 968 Gene3D Ribonuclease Inhibitor 183 243 IPR032675 -
Trre8g01002 968 ProSiteProfiles Protein kinase domain profile. 675 952 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g01002 968 ProSiteProfiles Leucine-rich repeat profile. 124 146 IPR001611 GO:0005515
Trre8g01002 968 Gene3D Transferase(Phosphotransferase) domain 1 750 957 - -
Trre8g01002 968 ProSitePatterns Protein kinases ATP-binding region signature. 681 704 IPR017441 GO:0005524
Trre8g01002 968 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 750 961 - -
Trre8g01002 968 Pfam Protein kinase domain 677 943 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g01002 968 FunFam Probable inactive receptor kinase RLK902 32 190 - -
Trre8g01002 968 FunFam Leucine-rich receptor-like protein kinase family protein 665 749 - -
Trre8g01002 968 Pfam Leucine Rich Repeat 221 242 IPR001611 GO:0005515
Trre8g01002 968 SMART serkin_6 675 952 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g01002 968 ProSitePatterns Serine/Threonine protein kinases active-site signature. 797 809 IPR008271 GO:0004672|GO:0006468
Trre8g01002 968 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 362 946 - -
Trre8g01002 968 FunFam Leucine-rich repeat receptor protein kinase EMS1 211 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01002 Trre-Chr8 7141001 7144033 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01002 24 956 Receptor kinase-like Gene Family AT1G72180 54.114 0.0 994
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre8g01002 Pkinase 3.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01002 - - gmx:100789704 1364.75