Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01001 ATGGGTTGTTGGAGATTCTCACTATCTTCAAATTCCACTACTAATGTTCCCTTTAAACGAATCTACCGCGGTCCCTTTATCAAAGACATTGACGGGGGAAATTCCCACGTTTGTGGTCTGATAAAAGGGACCAACGGTTTTCGCCCTGAGTGTTGGCAATGGAAAGGTTACGATTCAACTTTCGGAAAGAACCCGAACATGAAGATGAACATGTCAAGAATCGCAGTGGGGGAGAATTTTGCATGTGGGCTATATGAAATTGAAAAAGGGAATAATGTTACTTGCATAGGAAGTAACAAAAATGTTGTTGGAAATGAACCAAAGAATGGTGGAGATTATTCTTTAATTGAAGCTGGTTCAAATCATGTTTGTGCTATCACAAATGATGGTAGTTTGGATTGTTGGGGTGATATGGTTGGTGAGAAACCAAAAGGAAGATTCATTTCATTGGCTTTAGGAGAGAATAGAAGTTGTGCACTTGGGTATGATGGATTAATTACTTGTTGGGGTTTGAATAATTTCACCTTGCCATTGAAGTTAAAAGGGACTTATTTTGAGTCAATTGTGGCTAAAAAAAGTGTTTTTTGTGGTGTTTTGACTTCTAATTACTCTTTATTTTGTTGGGGTAATGAAATTTTTGAGTCAAAAAATGATGCATTCAAGGTGTTTGATAATGTGCTTCCTGGACCTTGTAAGAATCAATGTCCATGTGGACCTTTACCAGATTCTGCAAAACTTTGTGTCTCACCAGCCATCATTTGTAAACCTTGTTTACCATCATTTGAAATTCCATCATCACCGCAGTCGAATCCTCCGTTGGGAAGTCCCGGAAATTCATCGAAAAGTAGTACTTGGAGCAACAAAATGGTGGCGTTTCTAGTAATCGGATGTGTTGGTTGTAGTATCTTGTTACTTGCCTTATCATTCTTCCTTTACAAATACTGCAGAGGGACAATATGCAGATCTAAATCTAGAGTTCATGACTCTGGAAGATTAGACGATCTTGATCACGATACTGAATTGGAGCCTCGAGCTAATCCCGCAGTTCTTGAGAAGAGGTTAAGCCATGTAATCAGCAAGGGAAATGGAGGTAGCCTTTTGGAGGAATTTTCACTTCAAACATTAATTGAAGCCACCGGAAATTTCTCCGAAGGGAACAAAATCGGTGTTGGAAGCTTCGGTTCAGTGTACCATGCAAAACTTGAAGACGGAAAAGAAGTTGCTATAAAAAGAGCTGAAATGTCTTCAAATTCACTTTCATTTGGAAATGTTAGTGTCACCAAAAGACAAGAAGACAATGACAGTGCTTTTGTGAATGAACTTGAATCTTTGTCAAGACTCCACCACAAAAACTTGGTAAAATTACTCGGTTTCTACGAAGACAAAAATGAAAGAATCCTAGTATACGAATACATGAACAACGGAAGCTTAAACGATCATCTTCACAAGTTTCAAACTTCAACTATTATGTCATGGAGCGGTCGTATAAAAGTTGCATTAGACGCAGCTAGAGGTATAGAATATTTACACAAATACGCCATGCCACCAATTATTCACCGTGACATTAAGACGTCAAACATTTTATTAGATTCAAAATGTGTCACTAAAGTAGCCGATTTTGGGTTATCATTAATGGGTCCAGAAGATGAAGAGTCACATATTTCACTACTAGCAGCCGGAACCGTTGGTTACATGGATCCAGAATACTATAGGCTACAACATTTGACGACAAAAAGTGACGTGTATAGTTTCGGCGTTGTTTTGTTAGAACTTTTAAGTGGGTATAAAGCAATACATAAAAATGAAAATGGAGTGCCAAGAAATGTAGTTGATTTTGTGGTACCCTTTATTGTTCAAGATGAGATTCATAGAATTTTGGATCCAAAATTGCCACCACCAACACCATTTGAGATTGAAGGTGTGGCTTTTGTAGGTTATTTAGCTTGTGATTGTGTTCGTTTAGAAGGTAGAGATAGACCAAGTATGAGTCATGTTGTGAATAGTTTAGAGAAAGCACTAGAGGCTTGTTTGGCACAACCAATAATTGGTGAATCCAATAGGACCACTACTAGCACTATTTCTAATGAGTGA 2091 0.3802 MGCWRFSLSSNSTTNVPFKRIYRGPFIKDIDGGNSHVCGLIKGTNGFRPECWQWKGYDSTFGKNPNMKMNMSRIAVGENFACGLYEIEKGNNVTCIGSNKNVVGNEPKNGGDYSLIEAGSNHVCAITNDGSLDCWGDMVGEKPKGRFISLALGENRSCALGYDGLITCWGLNNFTLPLKLKGTYFESIVAKKSVFCGVLTSNYSLFCWGNEIFESKNDAFKVFDNVLPGPCKNQCPCGPLPDSAKLCVSPAIICKPCLPSFEIPSSPQSNPPLGSPGNSSKSSTWSNKMVAFLVIGCVGCSILLLALSFFLYKYCRGTICRSKSRVHDSGRLDDLDHDTELEPRANPAVLEKRLSHVISKGNGGSLLEEFSLQTLIEATGNFSEGNKIGVGSFGSVYHAKLEDGKEVAIKRAEMSSNSLSFGNVSVTKRQEDNDSAFVNELESLSRLHHKNLVKLLGFYEDKNERILVYEYMNNGSLNDHLHKFQTSTIMSWSGRIKVALDAARGIEYLHKYAMPPIIHRDIKTSNILLDSKCVTKVADFGLSLMGPEDEESHISLLAAGTVGYMDPEYYRLQHLTTKSDVYSFGVVLLELLSGYKAIHKNENGVPRNVVDFVVPFIVQDEIHRILDPKLPPPTPFEIEGVAFVGYLACDCVRLEGRDRPSMSHVVNSLEKALEACLAQPIIGESNRTTTSTISNE 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01001 696 SUPERFAMILY RCC1/BLIP-II 18 212 IPR009091 -
Trre8g01001 696 Gene3D Phosphorylase Kinase; domain 1 358 471 - -
Trre8g01001 696 Pfam Protein kinase domain 383 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g01001 696 ProSiteProfiles Protein kinase domain profile. 382 673 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g01001 696 Gene3D Transferase(Phosphotransferase) domain 1 472 682 - -
Trre8g01001 696 SUPERFAMILY Protein kinase-like (PK-like) 365 669 IPR011009 -
Trre8g01001 696 Gene3D - 3 228 IPR009091 -
Trre8g01001 696 ProSitePatterns Serine/Threonine protein kinases active-site signature. 517 529 IPR008271 GO:0004672|GO:0006468
Trre8g01001 696 CDD STKc_IRAK 388 671 - -
Trre8g01001 696 SMART serkin_6 382 673 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g01001 696 FunFam PTI1-like tyrosine-protein kinase 3 472 679 - -
Trre8g01001 696 Pfam Regulator of chromosome condensation (RCC1) repeat 116 137 - -
Trre8g01001 696 ProSitePatterns Protein kinases ATP-binding region signature. 388 410 IPR017441 GO:0005524
Trre8g01001 696 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 108 679 IPR044815 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01001 Trre-Chr8 7136840 7138930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01001 3 690 Receptor kinase-like Gene Family AT5G47850 50.430 0.0 626
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Trre8g01001 Pkinase 1.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01001 - - pvu:PHAVU_011G003100g 891.338