Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01000 ATGGAAGTTAGTGTAACGGAGGCAGGCACCCAAGAGTCTGTTGATTCCACAGAAGATTTTAATAACTATAGCCCCATCTCTGTGATGATTTCTGACCCACATGCGTTCAATTGTTGCAATTGTTTCCAATCCTTGACCATTCCCATCTTTCAGTGTATTAATGGTCATATTGTTTGCTCAAACTGCTATAATAAACTTCAGCAAATCTGTCTCAAATGCTCAAATTGCTTAATACGTTGTAGAGCCTTTGAGAATCTATTGAATTCTATCCAAATAAGTGTTGTCCAACCATTTCAGCTACCAACACGGGGATTCTCGAATCAAATTTTCTTATGGTCCCAAATATGCACTCTAAAGTTAGAGTCTTTTGTGAAGAATGTTCAACGGGTTAATTTAGCAACTCTTTCATCAAACTTTCTACTGATTCCATTTGAACATTTTGGTTCTTCTGAACTTTTAAACCTAGAAATTTGCATAAGCCCCAAGGTTGCGGTGCAGATGCAAATATTCTTAAAGACCTTTGCTAGACAGATGATCCCGTTGAGGGTGGAGAGTTCAGACACGATAGCCGATGTGAAGGTGAAGATTTTAAACAAGTTAGGGAACCCACCAGACGAACAACATATGTTATTTGCTGGTAAGAGACTAGATGACCACCACACCATTGCCTATTACAACATCCAAGATAATTCTATCATCAACTTGACCCCTAACTTACATGAGGCGCAACAATTGCGAATATTCATAAGGACCACTGATGGAAAGGAATTCCCCTTGATGGCTGAGAGTTCAAACACAATATCACATTTGAAGGCAATGATTTTTGACATAGAAAAAATCCCAGTGGACCAGCAACATTTGATCTTTGCTGGTAGGCTACTAGATGACTTCCGCACCATCAACGATTACAATTTCAAAGGGGCGATAACCATCCACCTAGTCCGGCAACCCATATCATGA 960 0.3958 MEVSVTEAGTQESVDSTEDFNNYSPISVMISDPHAFNCCNCFQSLTIPIFQCINGHIVCSNCYNKLQQICLKCSNCLIRCRAFENLLNSIQISVVQPFQLPTRGFSNQIFLWSQICTLKLESFVKNVQRVNLATLSSNFLLIPFEHFGSSELLNLEICISPKVAVQMQIFLKTFARQMIPLRVESSDTIADVKVKILNKLGNPPDEQHMLFAGKRLDDHHTIAYYNIQDNSIINLTPNLHEAQQLRIFIRTTDGKEFPLMAESSNTISHLKAMIFDIEKIPVDQQHLIFAGRLLDDFRTINDYNFKGAITIHLVRQPIS 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01000 319 Gene3D - 242 319 - -
Trre8g01000 319 SUPERFAMILY Ubiquitin-like 149 240 IPR029071 -
Trre8g01000 319 ProSitePatterns Ubiquitin domain signature. 271 296 IPR019954 -
Trre8g01000 319 CDD RING-HC_SIAHs 36 74 - -
Trre8g01000 319 PRINTS Ubiquitin signature 177 197 IPR019956 -
Trre8g01000 319 PRINTS Ubiquitin signature 198 218 IPR019956 -
Trre8g01000 319 PRINTS Ubiquitin signature 219 240 IPR019956 -
Trre8g01000 319 Pfam Ubiquitin family 247 315 IPR000626 GO:0005515
Trre8g01000 319 Pfam Ubiquitin family 169 235 IPR000626 GO:0005515
Trre8g01000 319 ProSiteProfiles Ubiquitin domain profile. 167 235 IPR000626 GO:0005515
Trre8g01000 319 Gene3D - 162 241 - -
Trre8g01000 319 ProSiteProfiles Ubiquitin domain profile. 245 319 IPR000626 GO:0005515
Trre8g01000 319 SUPERFAMILY Ubiquitin-like 241 315 IPR029071 -
Trre8g01000 319 SMART ubq_7 167 238 IPR000626 GO:0005515
Trre8g01000 319 SMART ubq_7 245 316 IPR000626 GO:0005515
Trre8g01000 319 PANTHER UBIQUITIN 167 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01000 Trre-Chr8 7129313 7130978 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01000 245 314 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 52.857 4.26e-17 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01000 - K08770 mtr:11432566 196.052