Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00996 ATGGCCCAACAGTCATCCAGGCTTCAGCGCTTGCTTACTCTCTTGGACACTGGCTCAACCCAAGCAACAAGGTTGACTGCAGCTCGGCAGATAGGGGAGATTGCAAAATCGCACCCTCAAGACTTGACCAGTCTTCTTAAGAAGGTTTCTCAATATCTGCGCAGTAAAAAATGGGATACAAGAGTCGCAGCTGCCCATGCAATTGGGTCTATTGCTGAGAATGTTAAGCACATAAGCTTGAATGAACTTATTGGTTCTGTTGTAACAAAAATGTCTGAGAGTGGGATATCTTGTAGTGTTGATGATCTGTGTGCATGGCCTTATTTGCAAGCAAAAATTACAGGAAGCTCATTTAGAAGCTTTGATATGAATAAGGTGCTTGAATTTGGAGCTTTGTTAGCATCAGGAGGACAGGAATATGATATCGGAAGTGATAATATAAAGAACCCAAAGGAGCGTTTGGTTCGCCAAAAGCAAAATCTCCGACGCCGTTTAGGTTTGGACGTCTGCGAACAATTTATGGATATCAATGATGTAATAAGAGATGAAGATCTTTTGGCACACAAATCAGATTCGTATCTCAATGGTGCAGATCATAAAGTTTTTACATCTTGTTCTGTACATAACATCCAGAAAATGGTTGCAAATATGGTTCCCAATGTCAAATCAAAGTGGCCGAGTGCTAGAGAACGGAATCTTTTAAAACGCAAAGCAAAAAATAACTCAAAGGACCAAACGAAGAGCTGGTGTGAAGATGGAACAGAGGCTTCAGGCACTCAAAATTTGACTTCAAAAGGCACATGTCCCGATTCAGTAAATCATAGTAAGCCATTCACGCAAGGTAATCACGACGAAGATGGATTTGAGCATGATGAAGATGGACAATGGCCTTTCAGTACTTTTGTTGAGCAACTTATTATTGATATGTTCGATCCTGTTTGGGAAGTACGGCATGGTAGCGTGATGGCATTGAGAGAGATTTTAACACATCAAGGGGCTTCTGCTGGAGTGTTGAAACACGAGCCACACTTGGATAGGACCTCATTTGTGGAATTAGAAGACAAAAATATAACAAATATGTTGAAGAGAGAGAGGGATATTGATTTAAATATGCAGGTTTCAGCAGATGAGTGTGTCTCGAATTTGAAGAGGCCAAAACTTGAAGATGTATCGTTGTCAACCTCTATGGATAGCGTGATGACCTGCAGCAACGATGGTGATATTGAAAACAGCATTAGTTCTGAAACCCAGGGGTGCAATTTACCTGTGGACTATGGGAATGGGAAATTTGATGGTAGTTCTATTGACATGAATCTGGAAACCCACTCTAATGATTTACATGATGCACGCAAGGAACTTGCTAATATAGCAGAGCAGAAGGGTTATTCTGATGACAAAATGATCCCCTCTGGAAACCCTAATGTTCTTAGAAATCTTCCTCAGAATTGTGAGCTGATGAACTTGGTTAAAGTAACTAGAAGTTCCTGGCTTCGGAACTGTGAATTTCTTCATGACTGTGTCATACGCTTTTTGTGTGTATTGTCACTTGACCGCTTTGGAGATTATGTATCTGATCAGGTTGTTGCGCCAGTGCGTGAAACCTGTGCACAGGCATTAGGTGCTGCATTTAAGTATATGCATGCTGCACTAGTAAATGAAACATTGAACATATTGTTGAAAATGCAGTGTAGTCCAGAATGGGAGATTCGTCATGGCAGTCTTCTGGGTATCAAATATTTGGTTGCTGTGCGGCAGGAGATGCTTTCCGATTTGCTGGGACGTGTTCTTCCTGCATGTAAGTCTGGGTTGGAGGACCCAGATGATGACGTCCGAGCAGTTGCTGCCGATGCTTTAATACCAGCTGCAGCGGCAATTGTTGCTTTGCAGGGTCAAACACTGCATTCAATTGTGATGCTGTTGTGGGATATATTGCTTGATTTGGATGATTTAAGTCCGTCCACTAGCAGTGTAATGAATCTGCTTGCAGAAATCTATTCTCATCAAGAGATGGTCCCAAAGATGTATAAAGTTTTTAAATTGGAAGACAAGGAAATAGAAAATGGAGCTGGTGCTTTTGGTGATAATGGAGAAGAAAATCCTTTTGTACTTTCAACTCTGGCACCACGTTTGTGGCCCTTTATGAGGCATAGCATCACATCTGTCCGTTATTCAGCAATACGAACTCTGGAGAGGCTACTCGAAGCTGGATATAAGAGAAGCATGTCTGAGCTCTCTAGTGCTTCATTTTGGCCCTCTTCTATATTTGGAGATACCCTTAGAATTGTCTTTCAAAATTTACTATTGGAAACAAATGATGATATTTTGCAATGTTCTGAGAGAGTTTGGAGTCTCCTTGTTCAGTGTTCTGTGGAGGACCTGGAGACAGCTGCAAGATCTTACATGACTTCCTGGATTGAACTTGCCTCTACACCTTTTGGTTCTGCATTAGATCCCTCAAAGATGTTTTGGCCCGTTGCCTTTCCACGAAAAAGTCAATTTAGAGCAGCAGCTAAAATGAGAGCTGTGAGAACTGAAAATGAATATGGCGGAGATCTTGGCCTTGAATCTACGATATCAACTATTCCACATGACAGAAATGGAGATGTTCCTATGAATTCCATTAAGATAGTTGTTGGTGCTGAGGTTGACACATCTGTAACTCGTACCCGGGTAGTTACAGCAACTGCTTTGGGAATTTTCGCCTCTAAGCTTCCAGAGGGTTCTTTAAAAAATACAATTGATCCACTGTGGAGTTCATTAACCTCTTTTTCTGGTGTCCAACGCCAGGTTGCATCTATGGTACTTATTTCTTGGTTCAAGGAGATTAGGACCAGGAATTTGTCTGAAAGCCTCAATGGTATTCCTGCTTCCCTCAAAGATTGGCTGCTGGACTTACTATCATGTTCTGACCCTGCATTCCCCACAAAAGGTTCGCTTCTTCCTTATGCTGAGCTTTCAAGAACTTATTCTAAGATGCGAAGTGAGGCAGCTCAATTGCTAAATGCAGTCAAATCTTCTGGCATGTTTAGCGAGTTATTGACAACAACCAATATTGAGTTGGATAACTTGAGTGTAGATGATGCCATTGGTTTTGCATCGAAAATTCCAGCACTGTGTAATGATAGTTCTGCAAATGAATCTTTGAGAATGAACACTATGGATGATATTGAATCCTCAAAACAGAGGCTCTTGACAACCTCTGGCTATTTGAAATGTGTTCAGAGTAATTTGCATGTTACGGTTACATCTGCAGTTGCAGCTGCAGTTGTGTGGATGTCTGAGTTTCCTACACGGCTCACCCCCATCATTTTGCCTTTGATGGCTTCAATCAAACGCGAGCAGGAGGAAATACTGCAAACTAAGTCAGCCGAGGCTCTCGCTGAACTAATATATCACTGTGTTTCACGTAGACCTTGCCCCAATGATAAATTAATCAAGAATATTTGTAGTTTGACTTGCATGGATCCCTCTGAGACCCCGCAAGCTAAATCCATTTGTTCTATGGAGAGTATTGATGACCAAGGTCTGCTATCTTTCAGAACTCCTGTGAATAAACAGAAGTCAAAGGTGCATGTTCTGACTGGTGAGGACCGATCAAAGGCAGAGGGATTTATAAGTAGACGTGGATCTGAGCTAGCACTGAAGCTTCTGTGTGAGAAGTTTGGTGTTTTGCTATTTGACAAGGTTCCTAAGCTGTGGGATTGCCTTACTGAGGTTCTTAAGCCAAGCTCCTATGAATCTCTACTTGCCGCTACTGAAAAGCATGATAGTGTTGCAATTGCGTGTGTTAGTGATCCTCAGACCTTGATTAACAATATCCAGGTTGTGCGATCTGTTGCTCCCTTGTTAAATGAGGAGTTGAAGCCAAAACTTTTGACACTTCTCCCATCTGTTTTTAAATGTGTTAAGCACTCTCATGTCGCCGTTAGACTAGCTGCTTCACGCTGTATCACTTCCATGGCCCAATCAATGATTGTGAAAGTTATGGGAGCCGTGGTTGAAAATGCTATCCCTATGTTGGAAGATGCCTCGTCAGTTCATGCTCGGCAAGGAGCTGGCATGTTGATTAGCTTTCTTGTTCAGGGGCTCGGTGTAGAATTGGTCCCTTATGCTCCTCTGCTGGTGGTTCCCCTTCTACGATGCATGAGTGATTCTGATCAGTCTGTCAGACAGAGTGTGACCCATAGCTTTGCTGCTCTTGTACCTTTACTTCCTTTAGCACGTGGTGTTCCACAACCAATTGGATTAGGGGAAGGTATATCTAGAAATGCAGAAGATTTACATTTTCTGGAGCAACTACTTGACAACTCTCATATTGAAGATTACAAGTTGTGCACTGAATTGAAAGTAACATTGAGAAGGTATCAGCAGGAAGGCATAAATTGGTTAGCATTTTTGAAACGTTTCAAACTTCATGGAATTTTATGTGATGACATGGGGCTTGGTAAGACACTTCAAGCCTCAGCAATTGTGGCCTCTGAAATAGTTGAGCGTCAAACTCAAATCGGCAATGAGGATCTTCTTCCATCTTTAATTATTTGCCCGTCAACACTAGTTGGGCACTGGGCTTTTGAGATAGAAAAGTTTATTGATGTTTCAGTCATATCTAGTCTTCAGTATGTTGGTTCTGCTCAGGATCGAATGCTTCTTCGAGATAGTTTTTGCAAACATAATGTTATTATAACATCATATGATGTTGTCCGTAAAGATATTGATTATTTGGGACAGCTGCTGTGGAATTACTGCATTTTAGATGAAGGACATATAATAAAAAATGCAAAGTCGAAAGTTACTCTTGCTGTAAAGCAGTTGAAAGCCCAACACCGCTTGATATTGAGTGGGACACCAATACAGAATAACATAATGGACTTGTGGTCCCTTTTTGATTTTCTGATGCCTGGATTTCTTGGAACAGATAGACAGTTCCAAGGCACATATGGGAAACCACTTTTAGCTGCAAGAGATCCAAAGTGCTCTGCTAAGGATGCCGAAGCTGGAGCACTTGCTATGGAAGCGTTGCATAAGCAGGTCATGCCTTTTCTCCTTCGGAGGACAAAGGATGAAGTCTTGTCCGATCTGCCGGAGAAAATAATTCAAGACAGATACTGTGATTTGAGTTCTGTGCAACTTAAACTTTACGAACAGTTTTCTGGGTCTCGTGCGAAACAAGAGATGTCATCTATTGTAACAACGAATGAGTCAGCTGCAGCAGAAGGAAGTAGCAGTTCTACCAAAGCGTCTTCACATGTTTTCCAGGCACTCCAATACTTGCTGAAACTTTGTAGTCATCCATTGCTTGTACTTGGTGGGAAGATTCCAGATTCACTTTCTACCATCCTCTCAGAATTGTTCCCTGCTGGCTCCGATATCATTTCAGAACTTCACAAACTCCACCACTCCCCAAAATTAGTTGCTCTTCATGAGATTCTTGAAGAGTGTGGAATTGGAGTTGACGCTTCAGGTTCTGAGGCTGGTGTTGGCATTGGACAGCATAGGGTCTTAATATTTGCTCAACATAAGGCGTTCTTGGATATAATTGAAAAAGATTTGTTTCAGTCACACATGAAAAATGTCACATATTTGCGGCTGGATGGATCAGTTGAGACCGAGAAGCGATTTGAAATTGTAAAAGCTTTCAATTCAGATCCTACCATTGATGTCTTATTGCTCACGACTCATGTGGGCGGGCTTGGTTTGAACCTAACATCTGCAGATACACTTGTTTTTGTGGAGCATGACTGGAATCCTATGCGCGATCTTCAGGCTATGGATAGAGCGCACAGGTTAGGTCAGAAAAAAGTAGTTAATGTTCACCGTCTGATAATGCGTGGTACATTGGAAGAGAAAGTTATGAGTCTACAACGGTTTAAAGTGTCAGTTGCTAATGCTGTCATTAATGCGGAAAATGCTAGTTTGAAAACAATGAATACAGATCAGTTGCTTGATTTATTTGCATCAGCAGAAATCCCCAAGAAGGGCTCTTCTGTTGCGAAGAGTTCAGAGGACAACGCTGATGGAGGCATAGGTACTGGAAAGGGATTGAAAGCAATACTTGGGGGATTGGAGGATCTATGGGATCAATCACAGTATACAGAAGAGTACAATTTGAGTCAATTTTTGGCGAAGCTTAATGGTTAA 6138 0.4176 MAQQSSRLQRLLTLLDTGSTQATRLTAARQIGEIAKSHPQDLTSLLKKVSQYLRSKKWDTRVAAAHAIGSIAENVKHISLNELIGSVVTKMSESGISCSVDDLCAWPYLQAKITGSSFRSFDMNKVLEFGALLASGGQEYDIGSDNIKNPKERLVRQKQNLRRRLGLDVCEQFMDINDVIRDEDLLAHKSDSYLNGADHKVFTSCSVHNIQKMVANMVPNVKSKWPSARERNLLKRKAKNNSKDQTKSWCEDGTEASGTQNLTSKGTCPDSVNHSKPFTQGNHDEDGFEHDEDGQWPFSTFVEQLIIDMFDPVWEVRHGSVMALREILTHQGASAGVLKHEPHLDRTSFVELEDKNITNMLKRERDIDLNMQVSADECVSNLKRPKLEDVSLSTSMDSVMTCSNDGDIENSISSETQGCNLPVDYGNGKFDGSSIDMNLETHSNDLHDARKELANIAEQKGYSDDKMIPSGNPNVLRNLPQNCELMNLVKVTRSSWLRNCEFLHDCVIRFLCVLSLDRFGDYVSDQVVAPVRETCAQALGAAFKYMHAALVNETLNILLKMQCSPEWEIRHGSLLGIKYLVAVRQEMLSDLLGRVLPACKSGLEDPDDDVRAVAADALIPAAAAIVALQGQTLHSIVMLLWDILLDLDDLSPSTSSVMNLLAEIYSHQEMVPKMYKVFKLEDKEIENGAGAFGDNGEENPFVLSTLAPRLWPFMRHSITSVRYSAIRTLERLLEAGYKRSMSELSSASFWPSSIFGDTLRIVFQNLLLETNDDILQCSERVWSLLVQCSVEDLETAARSYMTSWIELASTPFGSALDPSKMFWPVAFPRKSQFRAAAKMRAVRTENEYGGDLGLESTISTIPHDRNGDVPMNSIKIVVGAEVDTSVTRTRVVTATALGIFASKLPEGSLKNTIDPLWSSLTSFSGVQRQVASMVLISWFKEIRTRNLSESLNGIPASLKDWLLDLLSCSDPAFPTKGSLLPYAELSRTYSKMRSEAAQLLNAVKSSGMFSELLTTTNIELDNLSVDDAIGFASKIPALCNDSSANESLRMNTMDDIESSKQRLLTTSGYLKCVQSNLHVTVTSAVAAAVVWMSEFPTRLTPIILPLMASIKREQEEILQTKSAEALAELIYHCVSRRPCPNDKLIKNICSLTCMDPSETPQAKSICSMESIDDQGLLSFRTPVNKQKSKVHVLTGEDRSKAEGFISRRGSELALKLLCEKFGVLLFDKVPKLWDCLTEVLKPSSYESLLAATEKHDSVAIACVSDPQTLINNIQVVRSVAPLLNEELKPKLLTLLPSVFKCVKHSHVAVRLAASRCITSMAQSMIVKVMGAVVENAIPMLEDASSVHARQGAGMLISFLVQGLGVELVPYAPLLVVPLLRCMSDSDQSVRQSVTHSFAALVPLLPLARGVPQPIGLGEGISRNAEDLHFLEQLLDNSHIEDYKLCTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASEIVERQTQIGNEDLLPSLIICPSTLVGHWAFEIEKFIDVSVISSLQYVGSAQDRMLLRDSFCKHNVIITSYDVVRKDIDYLGQLLWNYCILDEGHIIKNAKSKVTLAVKQLKAQHRLILSGTPIQNNIMDLWSLFDFLMPGFLGTDRQFQGTYGKPLLAARDPKCSAKDAEAGALAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSSVQLKLYEQFSGSRAKQEMSSIVTTNESAAAEGSSSSTKASSHVFQALQYLLKLCSHPLLVLGGKIPDSLSTILSELFPAGSDIISELHKLHHSPKLVALHEILEECGIGVDASGSEAGVGIGQHRVLIFAQHKAFLDIIEKDLFQSHMKNVTYLRLDGSVETEKRFEIVKAFNSDPTIDVLLLTTHVGGLGLNLTSADTLVFVEHDWNPMRDLQAMDRAHRLGQKKVVNVHRLIMRGTLEEKVMSLQRFKVSVANAVINAENASLKTMNTDQLLDLFASAEIPKKGSSVAKSSEDNADGGIGTGKGLKAILGGLEDLWDQSQYTEEYNLSQFLAKLNG 2045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00996 2045 Coils Coil 439 459 - -
Trre8g00996 2045 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1431 1684 IPR027417 -
Trre8g00996 2045 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1464 1634 IPR014001 -
Trre8g00996 2045 SMART helicmild6 1844 1930 IPR001650 -
Trre8g00996 2045 FunFam TATA-binding protein-associated factor BTAF1 1 96 - -
Trre8g00996 2045 Coils Coil 982 1002 - -
Trre8g00996 2045 MobiDBLite consensus disorder prediction 236 293 - -
Trre8g00996 2045 FunFam TATA-binding protein-associated factor 172 1694 2010 - -
Trre8g00996 2045 SMART ultradead3 1448 1642 IPR014001 -
Trre8g00996 2045 FunFam B-TFIID TATA-box-binding protein-associated factor 1 1422 1683 - -
Trre8g00996 2045 CDD SF2_C_SNF 1799 1941 - -
Trre8g00996 2045 Pfam Domain of unknown function (DUF3535) 781 1235 IPR022707 -
Trre8g00996 2045 Pfam SNF2-related domain 1470 1766 IPR000330 GO:0005524|GO:0140658
Trre8g00996 2045 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1820 1980 IPR001650 -
Trre8g00996 2045 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1685 1985 IPR027417 -
Trre8g00996 2045 SUPERFAMILY ARM repeat 6 1488 IPR016024 -
Trre8g00996 2045 PANTHER TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172 4 2044 IPR044972 GO:0003677|GO:0016887|GO:0017025
Trre8g00996 2045 MobiDBLite consensus disorder prediction 251 278 - -
Trre8g00996 2045 FunFam TATA-binding protein-associated factor BTAF1 507 687 - -
Trre8g00996 2045 Gene3D - 1425 1683 IPR038718 -
Trre8g00996 2045 Gene3D - 1694 2006 IPR027417 -
Trre8g00996 2045 MobiDBLite consensus disorder prediction 236 250 - -
Trre8g00996 2045 CDD DEXHc_Mot1 1452 1684 IPR044078 GO:0005524
Trre8g00996 2045 Gene3D - 4 94 IPR011989 -
Trre8g00996 2045 FunFam TATA-binding protein-associated factor BTAF1 1199 1410 - -
Trre8g00996 2045 Gene3D - 1271 1411 IPR011989 -
Trre8g00996 2045 Gene3D - 506 803 IPR011989 -
Trre8g00996 2045 MobiDBLite consensus disorder prediction 279 293 - -
Trre8g00996 2045 Pfam Helicase conserved C-terminal domain 1830 1930 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00996 Trre-Chr8 7093321 7110938 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00996 1447 1985 RAD5 or RAD16-like Gene Family AT1G02670 26.131 5.63e-39 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre8g00996 DUF3535 7.9e-107 No_clan