Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00976 ATGCAACCTAGTTCCGGCGGTGGTGGTTTGACACGGTTTCATTCAACTCCGGTGAATTGGATAGAATCATTTATTCTTAAAGAAGAAGAGGAAGTTGATGAAAGGCAGCAACAACAACAAGACAACTTAAGTTTTACTCAACTGCTTTCCAATAACGCTGTTGCTGGCTCTTCAAATTCTGATTCTCACTCTCAACCATATTTATCTGATTATTACTACAACTCTTCAACTCATACCCCAACTTCTGTCAATGCTTGTAATAATCCCTTCTCACAGGGAGTTGAGGATAGTGCTAATGCACTGGACCTTAAAATGGAAAAGATTTTAGAGGATTCAGTTCCTTGTAAGATTCGGGCTAAGCGTGGTTTTGCTACACATCCAAGGAGTATTGCTGAAAGGGTTCGGAGGACTCGTATTAGTGACCGCATAAGAAAACTTCAAGAACTTGTGCCAAACATGGACAAGCAAACAAATACTGCAGAGATGTTAGATGAGGCAGTAGCTTATGTCAAGTTTCTACAAAATCAAATCGAGGAGCTAACAGAACAACAACGGAGGTGTAAATGCACGATTCACGAGTAA 582 0.4038 MQPSSGGGGLTRFHSTPVNWIESFILKEEEEVDERQQQQQDNLSFTQLLSNNAVAGSSNSDSHSQPYLSDYYYNSSTHTPTSVNACNNPFSQGVEDSANALDLKMEKILEDSVPCKIRAKRGFATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTNTAEMLDEAVAYVKFLQNQIEELTEQQRRCKCTIHE 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00976 193 Coils Coil 163 190 - -
Trre8g00976 193 Gene3D - 124 193 IPR036638 GO:0046983
Trre8g00976 193 Pfam Helix-loop-helix DNA-binding domain 128 174 IPR011598 GO:0046983
Trre8g00976 193 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 44 187 - -
Trre8g00976 193 CDD bHLH_AtbHLH_like 128 180 IPR045239 -
Trre8g00976 193 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 123 173 IPR011598 GO:0046983
Trre8g00976 193 SMART finulus 129 179 IPR011598 GO:0046983
Trre8g00976 193 FunFam Transcription factor bHLH130 family 124 192 - -
Trre8g00976 193 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 125 191 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00976 Trre-Chr8 6998656 7001857 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00976 102 193 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09180 76.087 1.43e-45 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre8g00976 HLH 1.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00976 - - gmx:100527723 190.274