Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00951 ATGGCTTTTTGGGGTGTTGAAATCAAACCTGGAAAGCCTTTTACTCACACATACGATGCTTCCAAAGGACGCCTTCACATTTCAATGGCCACTTTGGGACTTGGCACTGCAATTACGAAAAGCACACTGCAATGTAATGTGGGAAACAAAAGCCCTGTTTATCTTTGCTCTCTTTATCCTGGAAAAACTGAGTCGTTGCAATTGAATTTGGAGCTTGAGGAAGATGGTAATGTTATTTTCTCCGTCATTGGCCCTCGGAGTATTCATCTATGCGGTTATTATCTTGCTCATGGCCGCTATACCAATACTCTTGATGAATCGGAATCATATGGAGAAGATATAGCTGATACAGAAACAGAGAAATCCGTTCACAGTGATGAAGATGCCTACGATGATAGTTTTATTGATGATGACAATGATCCAGCAGTTTTCTCACCATCTCCTATTTCCAATGAAGAGGATGCATCTTATGATAGCGGACGGAAAAGTGCGAAAGGCAGCCGAAGAAGGCTGAGGAAGAAGAACCAGTTGGTAGAGTCGGATGATGATATTGGTCTTGAAGAAAAGAAAATTGTCAATGACAATGTGTTTGTACAATCTCAGGAAATTGATAATGAAGATAGTCTACCAATTTCATCTATTTGCAAGAATAAAGCCTCTGGAAGGATCTTGGATCAGGAAATGGATGATATTGTTTACAAAGAAGCAGTCGATGCTGGCAAAAAAGACAGTGAAGACCCTGAGAATAGTACTATTGAAACAAAATTGAAAACCGACAATGTTGTTGCAGATAATCAGAGTCATAGGGAAGCGGAACCCTCAGATCCCTTGGCAGTTCCTTGCACTGTTCCGGATGTTGGGGATATTAAAAAGTCAAAAAAGAAAAAGAAGGGAAAGGAGAAAGAAACCAAGAGTTCTTGTAATGGTAATTCCACCAAACTAGATAATGCTGCGCAAGATGAGCAAAAAATGAACACGGCCCAGGATCTCTTGGATCAGGAAATGGCTGATAATGTCGACAAAGAAGCAGTTGATGCTGGCAATAATGAACAGCACCAGCAGCAAGCTGATGATAAGAAAGCTGAAACCGAGGATAAAATACTTCCTTCTTCACAGGTTGGTCAAGGACAGGATGAAAAACCAAAGAGAAAAAGGAAGGAACGGTCAAATGCTGATGATGCTTGTATTAGCAATGTTGTTAACCTGCCACAGGGAAATGAAGGCAATAATCAGGACATAGTTAATAGGGATGTTAAGATTTCAGACAGTGTTGCACTGCCATCCACTGAAACAGATTCTCCAAAGAAAACAAAGAGGAGAAAAAAAGAACATAAAAACAAAGCTTCACTTCCTGAAGGTGACAACGGAAATGGTGAAGGTATCATTCAAGATGAGAAAGCCAACAAAGAGTCAGCAGAGTCTGGTAGTCTGATTCATAAACTTTCTGAAACGAAAGAGCAACATCAGAAGCTAACAATTGAAAATGTGGACAATGGGGTTCAAGACAATCCCGATGGAAATCAATCTGAAGATAAGAAGGTTAAGAATAAGAAGAAAAGTAAAAGTCAGGGCAGTGAAGTTGCAAATTCTGCTTTGCCTGTATCGGTTGAGCCAAGTACTGAGATGATGAAGGAGGATGGAAATAATATGGAGGATACAAAGTCTTCCCAAGTTAGAACATTGTCAAATGGACTAGTTATTCAAGAGCTAGTGACGGGGAAAGAAAATGGGAAAATTGCTGCATTAGGGAAAAAGTCAAATGCTGGCCAAGCCCCTTTCAAATTTCGCCTTGGTAAAGGAGAAGTTATTGAGGGTTTGGATATTGGCCTTGAAGGCATGCGAGTTGGAGAAAAGAGAAGACTCGTAATTCCACCATCAATGACGTCTAAGAAGAATGGTGACAGTGAAAACATACCACCGAATTCATGGTTGATTTATGAATTGGAACTTGTTAAAGTGCATTGA 1965 0.4015 MAFWGVEIKPGKPFTHTYDASKGRLHISMATLGLGTAITKSTLQCNVGNKSPVYLCSLYPGKTESLQLNLELEEDGNVIFSVIGPRSIHLCGYYLAHGRYTNTLDESESYGEDIADTETEKSVHSDEDAYDDSFIDDDNDPAVFSPSPISNEEDASYDSGRKSAKGSRRRLRKKNQLVESDDDIGLEEKKIVNDNVFVQSQEIDNEDSLPISSICKNKASGRILDQEMDDIVYKEAVDAGKKDSEDPENSTIETKLKTDNVVADNQSHREAEPSDPLAVPCTVPDVGDIKKSKKKKKGKEKETKSSCNGNSTKLDNAAQDEQKMNTAQDLLDQEMADNVDKEAVDAGNNEQHQQQADDKKAETEDKILPSSQVGQGQDEKPKRKRKERSNADDACISNVVNLPQGNEGNNQDIVNRDVKISDSVALPSTETDSPKKTKRRKKEHKNKASLPEGDNGNGEGIIQDEKANKESAESGSLIHKLSETKEQHQKLTIENVDNGVQDNPDGNQSEDKKVKNKKKSKSQGSEVANSALPVSVEPSTEMMKEDGNNMEDTKSSQVRTLSNGLVIQELVTGKENGKIAALGKKSNAGQAPFKFRLGKGEVIEGLDIGLEGMRVGEKRRLVIPPSMTSKKNGDSENIPPNSWLIYELELVKVH 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00951 654 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 568 654 IPR001179 GO:0003755
Trre8g00951 654 MobiDBLite consensus disorder prediction 377 392 - -
Trre8g00951 654 MobiDBLite consensus disorder prediction 394 431 - -
Trre8g00951 654 Pfam Nucleoplasmin-like domain 3 95 IPR041232 -
Trre8g00951 654 MobiDBLite consensus disorder prediction 334 366 - -
Trre8g00951 654 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 586 651 IPR001179 GO:0003755
Trre8g00951 654 Gene3D Nucleoplasmin core domain 1 99 - -
Trre8g00951 654 MobiDBLite consensus disorder prediction 238 253 - -
Trre8g00951 654 MobiDBLite consensus disorder prediction 238 558 - -
Trre8g00951 654 MobiDBLite consensus disorder prediction 307 332 - -
Trre8g00951 654 MobiDBLite consensus disorder prediction 114 129 - -
Trre8g00951 654 MobiDBLite consensus disorder prediction 506 522 - -
Trre8g00951 654 MobiDBLite consensus disorder prediction 109 176 - -
Trre8g00951 654 PANTHER FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA 41 653 - -
Trre8g00951 654 Gene3D - 483 654 IPR046357 GO:0003755
Trre8g00951 654 SUPERFAMILY FKBP-like 553 653 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00951 Trre-Chr8 6829850 6837081 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00951 592 651 Calmodulin-binding Proteins AT5G48570 43.333 9.31e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00951 K14826 - gmx:100798135 604.749