Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00950 ATGGCTTTTTGGGGTGTTGAAATCAAACCTGGAAAGCCTTTTACTCACACATACGATGCTTCCAAAGGACGCCTTCACATTTCAATGGCCACTTTGGGACTTGGCACTGCAATTACGAAAAGCACACTGCAATGTAATGTGGGAAACAAAAGCCCTGTTTATCTTTGCTCTCTTTATCCTGGAAAAACTGAGTCGTTGCAATTGAATTTGGAGCTTGAGGAAGATGGTAATGTTATTTTCTCCGTCATTGGCCCTCGGAGTATTCATCTATGCGGTTATTATCTTGCTCATGGCCGCTATACCAATACTCTTGATGAATCGGAATCATATGGAGAAGATATAGCTGATACAGAAACAGAGAAATCCGTTCACAGTGATGAAGATGCCTACGATGATAGTTTTATTGATGATGACAATGATCCAGCAGTTTTCTCACCATCTCCTATTTCCAATGAAGAGGATGCATCTTATGATAGCGGACGGAAAAGTGCGAAAGGCAGCCGAAGAAGGCTGAGGAAGAAGAACCAGTTGGTAGAGTCGGATGATGATATTGGTCTTGAAGAAAAGAAAATTGTCAATGACAATGTGTTTGTACAATCTCAGGAAATTGATAATGAAGATAGTCTACCAATTTCATCTATTTGCAAGAATAAAGCCTCTGGAAGGATCTTGGATCAGGAAATGGATGATATTGTTTACAAAGAAGCAGTCGATGCTGGCAAAAAAGACAGTGAAGACCCTGAGAATAGTACTATTGAAACAAAATTGAAAACCGACAATGTTGTTGCAGATAATCAGAGTCATAGGGAAGCGGAACCCTCAGATCCCTTGGCAGTTCCTTGCACTGTTCCGGATGTTGGGGATATTAAAAAGTCAAAAAAGAAAAAGAAGGGAAAGGAGAAAGAAACCAAGAGTTCTTGTAATGGTAATTCCACCAAACTAGATAATGCTGCGCAAGATGAGCAAAAAATGAACACGGCCCAGGATCTCTTGGATCAGGAAATGGCTGATAATGTCGACAAAGAAGCAGTTGATGCTGGCAATAATGAACAGCACCAGCAGCAAGCTGATGATAAGAAAGCTGAAACCGAGGATAAAATACTTCCTTCTTCACAGGTTGGTCAAGGACAGGATGAAAAACCAAAGAGAAAAAGGAAGGAACGGTCAAATGCTGATGATGCTTGTATTAGCAATGTTGTTAACCTGCCACAGGGAAATGAAGGCAATAATCAGGACATAGTTAATAGGGATGTTAAGATTTCAGACAGTGTTGCACTGCCATCCACTGAAACAGATTCTCCAAAGAAAACAAAGAGGAGAAAAAAAGAACATAAAAACAAAGCTTCACTTCCTGAAGGTGACAACGGAAATGGTGAAGGTATCATTCAAGATGAGAAAGCCAACAAAGAGTCAGCAGAGTCTGGTAGTCTGATTCATAAACTTTCTGAAACGAAAGAGCAACATCAGAAGCTAACAATTGAAAACAGTGTGGACAATGGGGTTCAAGACAATCCCGATGGAAATCAATCTGAAGATAAGAAGGTTAAGAATAAGAAGAAAAGTAAAAGTCAGGGCAGTGAAGTTGCAAATTCTGCTTTGCCTGTATCGGTTGAGCCAAGTACTGAGATGATGAAGGAGGATGGAAATAATATGGAGGATACAAAGTCTTCCCAAGTTAGAACATTGTCAAATGGACTAGTTATTCAAGAGCTAGTGACGGGGAAAGAAAATGGGAAAATTGCTGCATTAGGGAAAAAGTCAAATGCTGGCCAAGCCCCTTTCAAATTTCGCCTTGGTAAAGGAGAAGTTATTGAGGGTTTGGATATTGGCCTTGAAGGCATGCGAGTTGGAGAAAAGAGAAGACTCGTAATTCCACCATCAATGACGTCTAAGAAGAATGGTGACAGTGAAAACATACCACCGAATTCATGGTTGATTTATGAATTGGAACTTGTTAAAGTGCATTGA 1968 0.4019 MAFWGVEIKPGKPFTHTYDASKGRLHISMATLGLGTAITKSTLQCNVGNKSPVYLCSLYPGKTESLQLNLELEEDGNVIFSVIGPRSIHLCGYYLAHGRYTNTLDESESYGEDIADTETEKSVHSDEDAYDDSFIDDDNDPAVFSPSPISNEEDASYDSGRKSAKGSRRRLRKKNQLVESDDDIGLEEKKIVNDNVFVQSQEIDNEDSLPISSICKNKASGRILDQEMDDIVYKEAVDAGKKDSEDPENSTIETKLKTDNVVADNQSHREAEPSDPLAVPCTVPDVGDIKKSKKKKKGKEKETKSSCNGNSTKLDNAAQDEQKMNTAQDLLDQEMADNVDKEAVDAGNNEQHQQQADDKKAETEDKILPSSQVGQGQDEKPKRKRKERSNADDACISNVVNLPQGNEGNNQDIVNRDVKISDSVALPSTETDSPKKTKRRKKEHKNKASLPEGDNGNGEGIIQDEKANKESAESGSLIHKLSETKEQHQKLTIENSVDNGVQDNPDGNQSEDKKVKNKKKSKSQGSEVANSALPVSVEPSTEMMKEDGNNMEDTKSSQVRTLSNGLVIQELVTGKENGKIAALGKKSNAGQAPFKFRLGKGEVIEGLDIGLEGMRVGEKRRLVIPPSMTSKKNGDSENIPPNSWLIYELELVKVH 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00950 655 Gene3D Nucleoplasmin core domain 1 99 - -
Trre8g00950 655 MobiDBLite consensus disorder prediction 377 392 - -
Trre8g00950 655 MobiDBLite consensus disorder prediction 394 431 - -
Trre8g00950 655 Pfam Nucleoplasmin-like domain 3 95 IPR041232 -
Trre8g00950 655 MobiDBLite consensus disorder prediction 507 523 - -
Trre8g00950 655 MobiDBLite consensus disorder prediction 334 366 - -
Trre8g00950 655 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 587 652 IPR001179 GO:0003755
Trre8g00950 655 MobiDBLite consensus disorder prediction 238 253 - -
Trre8g00950 655 MobiDBLite consensus disorder prediction 307 332 - -
Trre8g00950 655 MobiDBLite consensus disorder prediction 114 129 - -
Trre8g00950 655 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 569 655 IPR001179 GO:0003755
Trre8g00950 655 MobiDBLite consensus disorder prediction 109 176 - -
Trre8g00950 655 PANTHER FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA 41 654 - -
Trre8g00950 655 Gene3D - 479 655 IPR046357 GO:0003755
Trre8g00950 655 MobiDBLite consensus disorder prediction 238 559 - -
Trre8g00950 655 SUPERFAMILY FKBP-like 554 654 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00950 Trre-Chr8 6829850 6837081 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00950 593 652 Calmodulin-binding Proteins AT5G48570 43.333 9.49e-11 62.8