Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00948 ATGGCTTTTTGGGGTGTTGAAATCAAACCTGGAAAGCCTTTTACTCACACATACGATGCTTCCAAAGGACGCCTTCACATTTCAATGGCCACTTTGGGACTTGGCACTGCAATTACGAAAAGCACACTGCAATGTAATGTGGGAAACAAAAGCCCTGTTTATCTTTGCTCTCTTTATCCTGGAAAAACTGAGTCGTTGCAATTGAATTTGGAGCTTGAGGAAGATGGTAATGTTATTTTCTCCGTCATTGGCCCTCGGAGTATTCATCTATGCGGTTATTATCTTGCTCATGGCCGCTATACCAATACTCTTGATGAATCGGAATCATATGGAGAAGATATAGCTGATACAGAAACAGAGAAATCCGTTCACAGTGATGAAGATGCCTACGATGATAGTTTTATTGATGATGACAATGATCCAGCAGTTTTCTCACCATCTCCTATTTCCAATGAAGAGGATGCATCTTATGATAGCGGACGGAAAAGTGCGAAAGGCAGCCGAAGAAGGCTGAGGAAGAAGAACCAGTTGGTAGAGTCGGATGATGATATTGGTCTTGAAGAAAAGAAAATTGTCAATGACAATGTGTTTGTACAATCTCAGGAAATTGATAATGAAGATAGTCTACCAATTTCATCTATTTGCAAGAATAAAGCCTCTGGAAGGATCTTGGATCAGGAAATGGATGATATTGTTTACAAAGAAGCAGTCGATGCTGGCAAAAAAGACAGTGAAGACCCTGAGAATAGTACTATTGAAACAAAATTGAAAACCGACAATGTTGTTGCAGATAATCAGAGTCATAGCAGGGAAGCGGAACCCTCAGATCCCTTGGCAGTTCCTTGCACTGTTCCGGATGTTGGGGATATTAAAAAGTCAAAAAAGAAAAAGAAGGGAAAGGAGAAAGAAACCAAGAGTTCTTGTAATGGTAATTCCACCAAACTAGATAATGCTGCGCAAGATGAGCAAAAAATGAACACGGCCCAGGATCTCTTGGATCAGGAAATGGCTGATAATGTCGACAAAGAAGCAGTTGATGCTGGCAATAATGAACAGCACCAGCAGCAAGCTGATGATAAGAAAGCTGAAACCGAGGATAAAATACTTCCTTCTTCACAGGTTGGTCAAGGACAGGATGAAAAACCAAAGAGAAAAAGGAAGGAACGGTCAAATGCTGATGATGCTTGTATTAGCAATGTTGTTAACCTGCCACAGGGAAATGAAGGCAATAATCAGGACATAGTTAATAGGGATGTTAAGATTTCAGACAGTGTTGCACTGCCATCCACTGAAACAGATTCTCCAAAGAAAACAAAGAGGAGAAAAAAAGAACATAAAAACAAAGCTTCACTTCCTGAAGGTGACAACGGAAATGGTGAAGGTATCATTCAAGATGAGAAAGCCAACAAAGAGTCAGCAGAGTCTGGTAGTCTGATTCATAAACTTTCTGAAACGAAAGAGCAACATCAGAAGCTAACAATTGAAAACAGTGTGGACAATGGGGTTCAAGACAATCCCGATGGAAATCAATCTGAAGATAAGAAGGTTAAGAATAAGAAGAAAAGTAAAAGTCAGGGCAGTGAAGTTGCAAATTCTGCTTTGCCTGTATCGGTTGAGCCAAGTACTGAGATGATGAAGGAGGATGGAAATAATATGGAGGATACAAAGTCTTCCCAAGTTAGAACATTGTCAAATGGACTAGTTATTCAAGAGCTAGTGACGGGGAAAGAAAATGGGAAAATTGCTGCATTAGGGAAAAAGTCAAATGCTGGCCAAGCCCCTTTCAAATTTCGCCTTGGTAAAGGAGAAGTTATTGAGGGTTTGGATATTGGCCTTGAAGGCATGCGAGTTGGAGAAAAGAGAAGACTCGTAATTCCACCATCAATGACGTCTAAGAAGAATGGTGACAGTGAAAACATACCACCGAATTCATGGTTGATTTATGAATTGGAACTTGTTAAAGTGCATTGA 1971 0.4023 MAFWGVEIKPGKPFTHTYDASKGRLHISMATLGLGTAITKSTLQCNVGNKSPVYLCSLYPGKTESLQLNLELEEDGNVIFSVIGPRSIHLCGYYLAHGRYTNTLDESESYGEDIADTETEKSVHSDEDAYDDSFIDDDNDPAVFSPSPISNEEDASYDSGRKSAKGSRRRLRKKNQLVESDDDIGLEEKKIVNDNVFVQSQEIDNEDSLPISSICKNKASGRILDQEMDDIVYKEAVDAGKKDSEDPENSTIETKLKTDNVVADNQSHSREAEPSDPLAVPCTVPDVGDIKKSKKKKKGKEKETKSSCNGNSTKLDNAAQDEQKMNTAQDLLDQEMADNVDKEAVDAGNNEQHQQQADDKKAETEDKILPSSQVGQGQDEKPKRKRKERSNADDACISNVVNLPQGNEGNNQDIVNRDVKISDSVALPSTETDSPKKTKRRKKEHKNKASLPEGDNGNGEGIIQDEKANKESAESGSLIHKLSETKEQHQKLTIENSVDNGVQDNPDGNQSEDKKVKNKKKSKSQGSEVANSALPVSVEPSTEMMKEDGNNMEDTKSSQVRTLSNGLVIQELVTGKENGKIAALGKKSNAGQAPFKFRLGKGEVIEGLDIGLEGMRVGEKRRLVIPPSMTSKKNGDSENIPPNSWLIYELELVKVH 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00948 656 Gene3D Nucleoplasmin core domain 1 99 - -
Trre8g00948 656 PANTHER FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA 41 655 - -
Trre8g00948 656 MobiDBLite consensus disorder prediction 508 524 - -
Trre8g00948 656 MobiDBLite consensus disorder prediction 238 560 - -
Trre8g00948 656 Pfam Nucleoplasmin-like domain 3 95 IPR041232 -
Trre8g00948 656 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 588 653 IPR001179 GO:0003755
Trre8g00948 656 MobiDBLite consensus disorder prediction 378 393 - -
Trre8g00948 656 MobiDBLite consensus disorder prediction 238 253 - -
Trre8g00948 656 MobiDBLite consensus disorder prediction 395 432 - -
Trre8g00948 656 MobiDBLite consensus disorder prediction 114 129 - -
Trre8g00948 656 MobiDBLite consensus disorder prediction 335 367 - -
Trre8g00948 656 MobiDBLite consensus disorder prediction 109 176 - -
Trre8g00948 656 Gene3D - 480 656 IPR046357 GO:0003755
Trre8g00948 656 MobiDBLite consensus disorder prediction 308 333 - -
Trre8g00948 656 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 570 656 IPR001179 GO:0003755
Trre8g00948 656 SUPERFAMILY FKBP-like 555 655 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00948 Trre-Chr8 6829850 6837081 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00948 594 653 Calmodulin-binding Proteins AT5G48570 43.333 9.19e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00948 K14826 - gmx:100798135 606.29