Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre8g00932 | ATGGCTGAATACGAAGCAGAAGAGAGATACGAAGAAGAAGGGAACGGAGGTGATGGAGAGGATCTTGACACTACTCATCCATTCCCTTCTTCTGCATCTTCTCCTCAACCTCTCGATCAATCTGTTTCCAAATCTCGCCATGAATCTCGTGATTATGATAGAGAATCTTCGAGAAGCAGAGAAAAGGAACGAGAGAAAGATAGGAAAAGAGAAAAGGAGAGACACAGAGATAGAGACAGCGAGAGAGACCGTGGTGATGGGGAGAAGGAAAGGGATCACCGTCGCAGAGATCATCGACATCGCGACAGAAAGGATAGGGAAAGGGATAGGGGTAGGGATGATGGTGATTCTCACAGAAGTCGTGACCGTGACAGAAGAAGGGATTATGATCGAGAGGAAAGGCATAAGCGTAGGTCTCGGTCTCGATCTATTTCACCGTCTAAGGATAGATCTGAGCATGGAACAAGGTCACGGTCTCGCTCAAAGAGCAAAAGGGTTAGTGGTTTTGATTTGGCTCCCCCTGCTTCGGCAATGTTAGCTGGTGCTGCGGCTGTTACAGTATGGGAAAAAGTTCATATCAAATTGCATGCTGTTATCTGGGCAATGTTGGGCTACTTGCCCCACTGTGCTGACAATGGGCGTGAGCCGACATCTGTAGCTTTTATGTCCAAGGAGGAATCAATGCACCGGTTTTTGGTGGGTCTTGTTCGTCTTCAACTGGAAATTATATCTACTTTGGTAGACATTACTGCGCCAAATCCTGCAATTCCTGGAGTGCTGCAAAACATGTTTCCAATGGCTACTAGTCAGATGCAGCAGTTCAATGCTCTCCCTATGATGCCAATTCAGGCTATGACACAACAGGCTACTCGACATGCTAGGCGTGTGTATGTTGGTGGACTCCCACCTACAGCCAATGAGCAGTCTGTTGCTATTTTCTTCAGCCAGGTCATGGCTAGTATTGGAGGAAATACTGCTGGTCCAGGTGATGCGGTGGTCAATGTTTACATTAACCATGACAAAAAATTCGCCTTTGTTGAGATGAGGTCTGTTGAGGAAGCTAGCAATGCAATGGCTTTGGATGGGATTATTTTTGAGGGGGCACCTGTCAAAGTCAGGAGACCTACTGATTACAACCCTTCTCTAGCTGCTACTCTAGGCCCAAGCCAACCTAACCCAAACCTGAACCTTGGTGCTGTTGGCTTAACACCTGGGTCAGCTGGTGGACTTGAAGGTCCTGATCGCATTTTTGTGGGTGGACTTCCCTATTACTTCACAGAAACTCAGATCAGGGAGCTTTTGGAAACTTTTGGTCCTCTTCGGGGTTTCGATCTGGTGAAAGATAGAGAAACAGGAAACTCAAAGGGTTATGCTTTTTGTGTCTACCAAGATCTTGCAGTTACAGATATTGCCTGTGCAGCTCTGAATGGAATTAAGATGGGAGATAAGACTCTTACCGTTAGACGAGCTAATCAAGGTACAACCCAGCCTAAACCTGAACAAGAGAGCATTTTAATGCATGCACAACAACAAATTGCTCTGCAGAAACTTATATTTCAACCAGCATTAGTGGCTACAAAGGTGGTGTGTTTAACTAACGCAGTTGCTCCTGATGAGCTCAAAGAAGATGAGGACTATGAAGAGATTATCGAAGACATGAGACAAGAGTGCTCCAAATTTGGTACTTTGGTGAATGTTGTGATCCCTCGTCCACAACCAGATGGAGATCTATCTGGTGGAGTTGGAAAGGTGTTTTTGGAATATGTGGATATTGAGGGTGCTACAAAAGCCCGCACTGGATTGAATGGGAGAAAATTTGGTGGAAACGAAGTAATAGCCGTCTTCTATCCAGAAAATAAATTTGCTCAGGGAGATTATGAAGGCTAA | 1887 | 0.4547 | MAEYEAEERYEEEGNGGDGEDLDTTHPFPSSASSPQPLDQSVSKSRHESRDYDRESSRSREKEREKDRKREKERHRDRDSERDRGDGEKERDHRRRDHRHRDRKDRERDRGRDDGDSHRSRDRDRRRDYDREERHKRRSRSRSISPSKDRSEHGTRSRSRSKSKRVSGFDLAPPASAMLAGAAAVTVWEKVHIKLHAVIWAMLGYLPHCADNGREPTSVAFMSKEESMHRFLVGLVRLQLEIISTLVDITAPNPAIPGVLQNMFPMATSQMQQFNALPMMPIQAMTQQATRHARRVYVGGLPPTANEQSVAIFFSQVMASIGGNTAGPGDAVVNVYINHDKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLTPGSAGGLEGPDRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAALNGIKMGDKTLTVRRANQGTTQPKPEQESILMHAQQQIALQKLIFQPALVATKVVCLTNAVAPDELKEDEDYEEIIEDMRQECSKFGTLVNVVIPRPQPDGDLSGGVGKVFLEYVDIEGATKARTGLNGRKFGGNEVIAVFYPENKFAQGDYEG | 628 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre8g00932 | 628 | FunFam | U2 snRNP auxiliary factor large subunit | 391 | 504 | - | - | |
| Trre8g00932 | 628 | MobiDBLite | consensus disorder prediction | 102 | 156 | - | - | |
| Trre8g00932 | 628 | MobiDBLite | consensus disorder prediction | 43 | 95 | - | - | |
| Trre8g00932 | 628 | MobiDBLite | consensus disorder prediction | 26 | 42 | - | - | |
| Trre8g00932 | 628 | NCBIfam | U2 snRNP auxilliary factor, large subunit, splicing factor | 255 | 626 | IPR006529 | GO:0003723|GO:0005634|GO:0006397 | |
| Trre8g00932 | 628 | CDD | RRM3_U2AF65 | 526 | 614 | - | - | |
| Trre8g00932 | 628 | SMART | rrm1_1 | 295 | 373 | IPR000504 | GO:0003723 | |
| Trre8g00932 | 628 | SMART | rrm1_1 | 528 | 614 | IPR000504 | GO:0003723 | |
| Trre8g00932 | 628 | SMART | rrm1_1 | 415 | 488 | IPR000504 | GO:0003723 | |
| Trre8g00932 | 628 | Coils | Coil | 52 | 72 | - | - | |
| Trre8g00932 | 628 | FunFam | U2 snRNP auxiliary factor large subunit | 522 | 627 | - | - | |
| Trre8g00932 | 628 | PANTHER | RNA-BINDING PROTEIN | 43 | 626 | - | - | |
| Trre8g00932 | 628 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 416 | 485 | IPR000504 | GO:0003723 | |
| Trre8g00932 | 628 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 551 | 611 | IPR000504 | GO:0003723 | |
| Trre8g00932 | 628 | CDD | RRM1_U2AF65 | 293 | 375 | - | - | |
| Trre8g00932 | 628 | Gene3D | - | 289 | 390 | IPR012677 | - | |
| Trre8g00932 | 628 | Gene3D | - | 405 | 510 | IPR012677 | - | |
| Trre8g00932 | 628 | SUPERFAMILY | RNA-binding domain, RBD | 277 | 380 | IPR035979 | GO:0003676 | |
| Trre8g00932 | 628 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
| Trre8g00932 | 628 | SUPERFAMILY | RNA-binding domain, RBD | 415 | 618 | IPR035979 | GO:0003676 | |
| Trre8g00932 | 628 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 294 | 377 | IPR000504 | GO:0003723 | |
| Trre8g00932 | 628 | CDD | RRM2_U2AF65 | 414 | 490 | - | - | |
| Trre8g00932 | 628 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 414 | 492 | IPR000504 | GO:0003723 | |
| Trre8g00932 | 628 | Gene3D | - | 522 | 627 | IPR012677 | - | |
| Trre8g00932 | 628 | MobiDBLite | consensus disorder prediction | 1 | 168 | - | - | |
| Trre8g00932 | 628 | FunFam | U2 snRNP auxiliary factor large subunit | 289 | 390 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre8g00932 | Trre-Chr8 | 6693257 | 6699666 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre8g00932 | 416 | 607 | Eukaryotic Initiation Factors Gene Family | AT1G22760 | 26.943 | 1.68e-06 | 49.3 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre8g00932 | K12837 | - | gmx:100793801 | 686.797 |