Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00931 ATGGCTGAATACGAAGCAGAAGAGAGATACGAAGAAGAAGGGAACGGAGGTGATGGAGAGGATCTTGACACTACTCATCCATTCCCTTCTTCTGCATCTTCTCCTCAACCTCTCGATCAATCTGTTTCCAAATCTCGCCATGAATCTCGTGATTATGATAGAGAATCTTCGAGAAGCAGAGAAAAGGAACGAGAGAAAGATAGGAAAAGAGAAAAGGAGAGACACAGAGATAGAGACAGCGAGAGAGACCGTGGTGATGGGGAGAAGGAAAGGGATCACCGTCGCAGAGATCATCGACATCGCGACAGAAAGGATAGGGAAAGGGATAGGGGTAGGGATGATGGTGATTCTCACAGAAGTCGTGACCGTGACAGAAGAAGGGATTATGATCGAGAGGAAAGGCATAAGCGTAGGTCTCGGTCTCGATCTATTTCACCGTCTAAGGATAGATCTGAGCATGGAACAAGGTCACGGTCTCGCTCAAAGAGCAAAAGGGTTAGTGGTTTTGATTTGGCTCCCCCTGCTTCGGCAATGTTAGCTGGTGCTGCGGCTGTTACAGTATGGGAAAAAGTTCATATCAAATTGCATGCTGTTATCTGGGCAATGTTGGGCTACTTGCCCCACTGTGCTGACAATGGGCGTGAGCCGACATCTGTAGCTTTTATGTCCAAGGAGGAATCAATGCACCGGTTTTTGGTGGGTCTTGTTCGTCAGATTACTGCGCCAAATCCTGCAATTCCTGGAGTGCTGCAAAACATGTTTCCAATGGCTACTAGTCAGATGCAGCAGTTCAATGCTCTCCCTATGATGCCAATTCAGGCTATGACACAACAGGCTACTCGACATGCTAGGCGTGTGTATGTTGGTGGACTCCCACCTACAGCCAATGAGCAGTCTGTTGCTATTTTCTTCAGCCAGGTCATGGCTAGTATTGGAGGAAATACTGCTGGTCCAGGTGATGCGGTGGTCAATGTTTACATTAACCATGACAAAAAATTCGCCTTTGTTGAGATGAGGTCTGTTGAGGAAGCTAGCAATGCAATGGCTTTGGATGGGATTATTTTTGAGGGGGCACCTGTCAAAGTCAGGAGACCTACTGATTACAACCCTTCTCTAGCTGCTACTCTAGGCCCAAGCCAACCTAACCCAAACCTGAACCTTGGTGCTGTTGGCTTAACACCTGGGTCAGCTGGTGGACTTGAAGGTCCTGATCGCATTTTTGTGGGTGGACTTCCCTATTACTTCACAGAAACTCAGATCAGGGAGCTTTTGGAAACTTTTGGTCCTCTTCGGGGTTTCGATCTGGTGAAAGATAGAGAAACAGGAAACTCAAAGGGTTATGCTTTTTGTGTCTACCAAGATCTTGCAGTTACAGATATTGCCTGTGCAGCTCTGAATGGAATTAAGATGGGAGATAAGACTCTTACCGTTAGACGAGCTAATCAAGGTACAACCCAGCCTAAACCTGAACAAGAGAGCATTTTAATGCATGCACAACAACAAATTGCTCTGCAGAAACTTATATTTCAACCAGCATTAGTGGCTACAAAGGTGGTGTGTTTAACTAACGCAGTTGCTCCTGATGAGCTCAAAGAAGATGAGGACTATGAAGAGATTATCGAAGACATGAGACAAGAGTGCTCCAAATTTGGTACTTTGGTGAATGTTGTGATCCCTCGTCCACAACCAGATGGAGATCTATCTGGTGGAGTTGGAAAGGTGTTTTTGGAATATGTGGATATTGAGGGTGCTACAAAAGCCCGCACTGGATTGAATGGGAGAAAATTTGGTGGAAACGAAGTAATAGCCGTCTTCTATCCAGAAAATAAATTTGCTCAGGGAGATTATGAAGGCTAA 1857 0.4572 MAEYEAEERYEEEGNGGDGEDLDTTHPFPSSASSPQPLDQSVSKSRHESRDYDRESSRSREKEREKDRKREKERHRDRDSERDRGDGEKERDHRRRDHRHRDRKDRERDRGRDDGDSHRSRDRDRRRDYDREERHKRRSRSRSISPSKDRSEHGTRSRSRSKSKRVSGFDLAPPASAMLAGAAAVTVWEKVHIKLHAVIWAMLGYLPHCADNGREPTSVAFMSKEESMHRFLVGLVRQITAPNPAIPGVLQNMFPMATSQMQQFNALPMMPIQAMTQQATRHARRVYVGGLPPTANEQSVAIFFSQVMASIGGNTAGPGDAVVNVYINHDKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLTPGSAGGLEGPDRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAALNGIKMGDKTLTVRRANQGTTQPKPEQESILMHAQQQIALQKLIFQPALVATKVVCLTNAVAPDELKEDEDYEEIIEDMRQECSKFGTLVNVVIPRPQPDGDLSGGVGKVFLEYVDIEGATKARTGLNGRKFGGNEVIAVFYPENKFAQGDYEG 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00931 618 FunFam U2 snRNP auxiliary factor large subunit 279 380 - -
Trre8g00931 618 FunFam U2 snRNP auxiliary factor large subunit 512 617 - -
Trre8g00931 618 CDD RRM1_U2AF65 283 365 - -
Trre8g00931 618 Gene3D - 279 380 IPR012677 -
Trre8g00931 618 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 404 482 IPR000504 GO:0003723
Trre8g00931 618 MobiDBLite consensus disorder prediction 102 156 - -
Trre8g00931 618 MobiDBLite consensus disorder prediction 43 95 - -
Trre8g00931 618 Gene3D - 395 500 IPR012677 -
Trre8g00931 618 NCBIfam U2 snRNP auxilliary factor, large subunit, splicing factor 245 616 IPR006529 GO:0003723|GO:0005634|GO:0006397
Trre8g00931 618 MobiDBLite consensus disorder prediction 26 42 - -
Trre8g00931 618 FunFam U2 snRNP auxiliary factor large subunit 381 494 - -
Trre8g00931 618 CDD RRM2_U2AF65 404 480 - -
Trre8g00931 618 SUPERFAMILY RNA-binding domain, RBD 267 370 IPR035979 GO:0003676
Trre8g00931 618 Coils Coil 52 72 - -
Trre8g00931 618 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 541 601 IPR000504 GO:0003723
Trre8g00931 618 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 406 475 IPR000504 GO:0003723
Trre8g00931 618 Gene3D - 512 617 IPR012677 -
Trre8g00931 618 SUPERFAMILY RNA-binding domain, RBD 405 608 IPR035979 GO:0003676
Trre8g00931 618 PANTHER RNA-BINDING PROTEIN 43 616 - -
Trre8g00931 618 MobiDBLite consensus disorder prediction 1 18 - -
Trre8g00931 618 SMART rrm1_1 285 363 IPR000504 GO:0003723
Trre8g00931 618 SMART rrm1_1 518 604 IPR000504 GO:0003723
Trre8g00931 618 SMART rrm1_1 405 478 IPR000504 GO:0003723
Trre8g00931 618 CDD RRM3_U2AF65 516 604 - -
Trre8g00931 618 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 284 367 IPR000504 GO:0003723
Trre8g00931 618 MobiDBLite consensus disorder prediction 1 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00931 Trre-Chr8 6693257 6699666 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00931 406 597 Eukaryotic Initiation Factors Gene Family AT1G22760 26.943 1.80e-06 49.3