Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00930 ATGGCTGAATACGAAGCAGAAGAGAGATACGAAGAAGAAGGGAACGGAGGTGATGGAGAGGATCTTGACACTACTCATCCATTCCCTTCTTCTGCATCTTCTCCTCAACCTCTCGATCAATCTGTTTCCAAATCTCGCCATGAATCTCGTGATTATGATAGAGAATCTTCGAGAAGCAGAGAAAAGGAACGAGAGAAAGATAGGAAAAGAGAAAAGGAGAGACACAGAGATAGAGACAGCGAGAGAGACCGTGGTGATGGGGAGAAGGAAAGGGATCACCGTCGCAGAGATCATCGACATCGCGACAGAAAGGATAGGGAAAGGGATAGGGGTAGGGATGATGGTGATTCTCACAGAAGTCGTGACCGTGACAGAAGAAGGGATTATGATCGAGAGGAAAGGCATAAGCGTAGGTCTCGGTCTCGATCTATTTCACCGTCTAAGGATAGATCTGAGCATGGAACAAGGTCACGGTCTCGCTCAAAGAGCAAAAGGGTTAGTGGTTTTGATTTGGCTCCCCCTGCTTCGGCAATGTTAGCTGGTGCTGCGGCTGTTACAGGTCAGATTACTGCGCCAAATCCTGCAATTCCTGGAGTGCTGCAAAACATGTTTCCAATGGCTACTAGTCAGATGCAGCAGTTCAATGCTCTCCCTATGATGCCAATTCAGGCTATGACACAACAGGCTACTCGACATGCTAGGCGTGTGTATGTTGGTGGACTCCCACCTACAGCCAATGAGCAGTCTGTTGCTATTTTCTTCAGCCAGGTCATGGCTAGTATTGGAGGAAATACTGCTGGTCCAGGTGATGCGGTGGTCAATGTTTACATTAACCATGACAAAAAATTCGCCTTTGTTGAGATGAGGTCTGTTGAGGAAGCTAGCAATGCAATGGCTTTGGATGGGATTATTTTTGAGGGGGCACCTGTCAAAGTCAGGAGACCTACTGATTACAACCCTTCTCTAGCTGCTACTCTAGGCCCAAGCCAACCTAACCCAAACCTGAACCTTGGTGCTGTTGGCTTAACACCTGGGTCAGCTGGTGGACTTGAAGGTCCTGATCGCATTTTTGTGGGTGGACTTCCCTATTACTTCACAGAAACTCAGATCAGGGAGCTTTTGGAAACTTTTGGTCCTCTTCGGGGTTTCGATCTGGTGAAAGATAGAGAAACAGGAAACTCAAAGGGTTATGCTTTTTGTGTCTACCAAGATCTTGCAGTTACAGATATTGCCTGTGCAGCTCTGAATGGAATTAAGATGGGAGATAAGACTCTTACCGTTAGACGAGCTAATCAAGGTACAACCCAGCCTAAACCTGAACAAGAGAGCATTTTAATGCATGCACAACAACAAATTGCTCTGCAGAAACTTATATTTCAACCAGCATTAGTGGCTACAAAGGTGGTGTGTTTAACTAACGCAGTTGCTCCTGATGAGCTCAAAGAAGATGAGGACTATGAAGAGATTATCGAAGACATGAGACAAGAGTGCTCCAAATTTGGTACTTTGGTGAATGTTGTGATCCCTCGTCCACAACCAGATGGAGATCTATCTGGTGGAGTTGGAAAGGTGTTTTTGGAATATGTGGATATTGAGGGTGCTACAAAAGCCCGCACTGGATTGAATGGGAGAAAATTTGGTGGAAACGAAGTAATAGCCGTCTTCTATCCAGAAAATAAATTTGCTCAGGGAGATTATGAAGGCTAA 1707 0.4564 MAEYEAEERYEEEGNGGDGEDLDTTHPFPSSASSPQPLDQSVSKSRHESRDYDRESSRSREKEREKDRKREKERHRDRDSERDRGDGEKERDHRRRDHRHRDRKDRERDRGRDDGDSHRSRDRDRRRDYDREERHKRRSRSRSISPSKDRSEHGTRSRSRSKSKRVSGFDLAPPASAMLAGAAAVTGQITAPNPAIPGVLQNMFPMATSQMQQFNALPMMPIQAMTQQATRHARRVYVGGLPPTANEQSVAIFFSQVMASIGGNTAGPGDAVVNVYINHDKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLTPGSAGGLEGPDRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAALNGIKMGDKTLTVRRANQGTTQPKPEQESILMHAQQQIALQKLIFQPALVATKVVCLTNAVAPDELKEDEDYEEIIEDMRQECSKFGTLVNVVIPRPQPDGDLSGGVGKVFLEYVDIEGATKARTGLNGRKFGGNEVIAVFYPENKFAQGDYEG 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00930 568 FunFam U2 snRNP auxiliary factor large subunit 229 330 - -
Trre8g00930 568 Gene3D - 462 567 IPR012677 -
Trre8g00930 568 MobiDBLite consensus disorder prediction 102 156 - -
Trre8g00930 568 MobiDBLite consensus disorder prediction 43 95 - -
Trre8g00930 568 SUPERFAMILY RNA-binding domain, RBD 226 320 IPR035979 GO:0003676
Trre8g00930 568 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 356 425 IPR000504 GO:0003723
Trre8g00930 568 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 491 551 IPR000504 GO:0003723
Trre8g00930 568 CDD RRM3_U2AF65 466 554 - -
Trre8g00930 568 NCBIfam U2 snRNP auxilliary factor, large subunit, splicing factor 48 566 IPR006529 GO:0003723|GO:0005634|GO:0006397
Trre8g00930 568 MobiDBLite consensus disorder prediction 26 42 - -
Trre8g00930 568 Gene3D - 345 450 IPR012677 -
Trre8g00930 568 MobiDBLite consensus disorder prediction 1 169 - -
Trre8g00930 568 SUPERFAMILY RNA-binding domain, RBD 355 556 IPR035979 GO:0003676
Trre8g00930 568 Coils Coil 52 72 - -
Trre8g00930 568 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 354 432 IPR000504 GO:0003723
Trre8g00930 568 Gene3D - 229 330 IPR012677 -
Trre8g00930 568 SMART rrm1_1 235 313 IPR000504 GO:0003723
Trre8g00930 568 SMART rrm1_1 468 554 IPR000504 GO:0003723
Trre8g00930 568 SMART rrm1_1 355 428 IPR000504 GO:0003723
Trre8g00930 568 CDD RRM1_U2AF65 233 315 - -
Trre8g00930 568 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 234 317 IPR000504 GO:0003723
Trre8g00930 568 MobiDBLite consensus disorder prediction 1 18 - -
Trre8g00930 568 CDD RRM2_U2AF65 354 430 - -
Trre8g00930 568 FunFam U2 snRNP auxiliary factor large subunit 462 567 - -
Trre8g00930 568 PANTHER RNA-BINDING PROTEIN 43 566 - -
Trre8g00930 568 FunFam U2 snRNP auxiliary factor large subunit 331 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00930 Trre-Chr8 6693257 6699666 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00930 356 547 Eukaryotic Initiation Factors Gene Family AT1G22760 26.943 2.69e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00930 K12837 - gmx:100793801 731.48