Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00908 ATGTCTGAATCTCAAGGTTCTTCTTCTTCTTCTAATGATTCAGACATAGATAATAACGATTCAGGTTGTTGTTCTAACAGATCTGATGCTTCTGCAGTATCTGAATTGAAGCTTTACAGAGCTTTTATATTCTCTGTTCCAATTTTCTTCACTTTGATTCTTCTTTTACTTTTCTATGTTTTTTATTTGAGACCAAGAAGAGTTGATTGGTCTTCTATTAGGATGAGGTCTGTTTCTGTTCTACAACATAATCATAATCATAACAATGCCATTTCAACTTCTGATTTGGGGTTGAAGAAAGAATTGAGAGAGATGCTTCCTATTATTGTGTACAATGAAAGCTTCTCTGTCAAAGATACACAATGCTCAGTATGTCTTTTGGACTACCAATCAGACGACAGACTTCAACAAATACCTGCATGCGGCCATACGTTTCACATGAGTTGCATTGATCTTTGGCTTTCCAGCCACAGCACCTGCCCTCTTTGCCGTTTGTCGCTACTACCTACTGTTAAATCTTCAACAGAAACATCCAATATGCAGAAACCATATTAG 555 0.3676 MSESQGSSSSSNDSDIDNNDSGCCSNRSDASAVSELKLYRAFIFSVPIFFTLILLLLFYVFYLRPRRVDWSSIRMRSVSVLQHNHNHNNAISTSDLGLKKELREMLPIIVYNESFSVKDTQCSVCLLDYQSDDRLQQIPACGHTFHMSCIDLWLSSHSTCPLCRLSLLPTVKSSTETSNMQKPY 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00908 184 MobiDBLite consensus disorder prediction 1 20 - -
Trre8g00908 184 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 169 IPR013083 -
Trre8g00908 184 ProSiteProfiles Zinc finger RING-type profile. 122 164 IPR001841 -
Trre8g00908 184 Pfam Ring finger domain 121 164 IPR001841 -
Trre8g00908 184 CDD RING-H2_EL5-like 121 164 - -
Trre8g00908 184 PANTHER RING-H2 FINGER PROTEIN ATL16 39 170 IPR044600 GO:0016567|GO:0016740
Trre8g00908 184 FunFam RING-H2 finger protein ATL7 87 169 - -
Trre8g00908 184 SMART ring_2 122 163 IPR001841 -
Trre8g00908 184 SUPERFAMILY RING/U-box 106 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00908 Trre-Chr8 6530026 6532565 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00908 28 169 C3H Transcription Factor Family AT4G10150 60.000 2.87e-63 193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00908 K19039 - gmx:100794211 215.698