Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00907 ATGTCTGAATCTCAAGGTTCTTCTTCTTCTTCTAATGATTCAGACATAGATAATAACGATTCAGGTTGTTGTTCTAACAGATCTGATGCTTCTGCAGTATCTGAATTGAAGCTTTACAGAGCTTTTATATTCTCTGTTCCAATTTTCTTCACTTTGATTCTTCTTTTACTTTTCTATGTTTTTTATTTGAGACCAAGAAGAGTTGATTGGTCTTCTATTAGGATGAGGTCTGTTTCTGTTCTACAACATAATCATAATCATAACAATGCCATTTCAACTTCTGATTTGGGGTTGAAGAAAGAATTGAGAGAGATGCTTCCTATTATTGTGTACAATGAAAGCTTCTCTGTCAAAGATACACAATGCTCAGTATGTCTTTTGGACTACCAATCAGACGACAGACTTCAACAAATACCTGCATGCGGCCATACGTTTCACATGAGTTGCATTGATCTTTGGCTTTCCAGCCACAGCACCTGCCCTCTTTGCCGTTTGTCGCTACTACCTACTGTTAAATCTTCAACAGAAACATCCAATATGCAGGCCACAAGCAATGAAGAAATAGAGATGCAACAAAGCAATGAAGAAACACTAGCAATGGAACTCTCTGACTCAAGATCTACTAGGCATCAAGAAACCACTGACATTCAAAATGTCTCCGATGAAGTTGCGATCAGCGCTCCAAACATCAATGTTGAGGGGGGAAATGCGCGAAACAACCAATAG 726 0.3857 MSESQGSSSSSNDSDIDNNDSGCCSNRSDASAVSELKLYRAFIFSVPIFFTLILLLLFYVFYLRPRRVDWSSIRMRSVSVLQHNHNHNNAISTSDLGLKKELREMLPIIVYNESFSVKDTQCSVCLLDYQSDDRLQQIPACGHTFHMSCIDLWLSSHSTCPLCRLSLLPTVKSSTETSNMQATSNEEIEMQQSNEETLAMELSDSRSTRHQETTDIQNVSDEVAISAPNINVEGGNARNNQ 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00907 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 171 IPR013083 -
Trre8g00907 241 MobiDBLite consensus disorder prediction 1 20 - -
Trre8g00907 241 ProSiteProfiles Zinc finger RING-type profile. 122 164 IPR001841 -
Trre8g00907 241 CDD RING-H2_EL5-like 121 164 - -
Trre8g00907 241 PANTHER RING-H2 FINGER PROTEIN ATL16 40 219 IPR044600 GO:0016567|GO:0016740
Trre8g00907 241 MobiDBLite consensus disorder prediction 198 220 - -
Trre8g00907 241 SMART ring_2 122 163 IPR001841 -
Trre8g00907 241 FunFam RING-H2 finger protein ATL7 87 169 - -
Trre8g00907 241 Pfam Ring finger domain 121 164 IPR001841 -
Trre8g00907 241 SUPERFAMILY RING/U-box 106 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00907 Trre-Chr8 6530026 6532748 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00907 28 169 C3H Transcription Factor Family AT4G10150 60.000 1.78e-63 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00907 K19039 - gmx:100794211 257.684