Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00899 ATGGAAAAAGAATTTGAAAGAGGTTACATAAAAAAAGGACCATGGAGTGTTGAAGAAGATGAAGTGTTGTTGAAACATGTTAACAAGTATGGTCCTCGAGATTGGAGCTGCATTCGATCCAAAGGTCTTTTGCCACGAACCGGAAAATCTTGCCGGTTAAGATGGGTTAATAAGCTTAGACCTGACTTGAAAACAGGGTGCAAGTTTTCATCAGAGGAGGAAAGATTGGTGATTGAATTACAGGGGCAATTTGGAAACAGATGGGCAAAGATTGCTAAGTATTTGGAAGGAAGAACAGACAATGATGTGAAGAATTTCTGGAGTAGCAGGAAAAAAAAGATGGAGAGGAAATATCCAAGGACACCATCACCGGATTCACCGCCATCAAAGAAGCACAAAAGCAAAGGAAAAGCTATTCCTAATCAACTCAAAGTTGAAAAGGTTCCTGAAAGTGGTTCCAATCAGCTGGATGAAAACCTTATTCACCCAATTTCTTATATGGGAAACAAAGAGGTGTTCAAGATGATCAATCTTCCAGATTTGACAAAGCCAAACTACCAAGATTTGAAGAGTGAACTTAATGCAGTTGAGGTTGAAGAAGTCACTACACTTCACACAGTACCATCATTTGAGTCTTCATCAGGGTACAACTTTCCTCTACCCCCTGAATCACAAATAGATTTTCCACTATTTCCAGAGTGTCAGGACCTTGTTCAAGAGCCTTTTTATCCAAATTTTATGGACATGTTTGAGCAGAAAAAGTGTTCAGAAAGTGTATGGAGTCAGAAGATTGGGACCAGGTTGCCAACTTTTGGACTTGAAGGAACTTCTCAGAGTGCAAGCTCAAACTGTTCCTTTAAGGACATCCCTACTGAAATGTTTGAATACTTTGCTCAATAG 900 0.3956 MEKEFERGYIKKGPWSVEEDEVLLKHVNKYGPRDWSCIRSKGLLPRTGKSCRLRWVNKLRPDLKTGCKFSSEEERLVIELQGQFGNRWAKIAKYLEGRTDNDVKNFWSSRKKKMERKYPRTPSPDSPPSKKHKSKGKAIPNQLKVEKVPESGSNQLDENLIHPISYMGNKEVFKMINLPDLTKPNYQDLKSELNAVEVEEVTTLHTVPSFESSSGYNFPLPPESQIDFPLFPECQDLVQEPFYPNFMDMFEQKKCSESVWSQKIGTRLPTFGLEGTSQSASSNCSFKDIPTEMFEYFAQ 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00899 299 ProSiteProfiles Myb-like domain profile. 68 111 IPR001005 -
Trre8g00899 299 PANTHER TRANSCRIPTION FACTOR DUO1 5 297 - -
Trre8g00899 299 SMART sant 65 113 IPR001005 -
Trre8g00899 299 SMART sant 11 61 IPR001005 -
Trre8g00899 299 FunFam Transcription factor GAMYB 67 140 - -
Trre8g00899 299 Pfam Myb-like DNA-binding domain 15 65 - -
Trre8g00899 299 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 63 IPR017930 -
Trre8g00899 299 FunFam MYB transcription factor 12 64 - -
Trre8g00899 299 Gene3D - 67 142 - -
Trre8g00899 299 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Trre8g00899 299 CDD SANT 68 107 IPR001005 -
Trre8g00899 299 CDD SANT 14 59 IPR001005 -
Trre8g00899 299 Gene3D - 11 64 - -
Trre8g00899 299 MobiDBLite consensus disorder prediction 106 143 - -
Trre8g00899 299 ProSiteProfiles Myb-like domain profile. 7 59 IPR001005 -
Trre8g00899 299 Pfam Myb-like DNA-binding domain 68 108 IPR001005 -
Trre8g00899 299 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 115 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00899 Trre-Chr8 6502466 6504252 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00899 10 116 MYB Transcription Factor Family AT3G60460 78.505 9.89e-59 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre8g00899 Myb_DNA-bind_6 3.2e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00899 K09422 - gmx:121173231 393.66