Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00890 ATGGACCTTGATTTGAATCAGGAGCCTATGGATCAAACTAGTAGTAGTACAGCAGTAGTTGCATTTGATTCTGTATTGGAAGAATTGGAAGCGGCGGAGGAAAACATACGGAATCGAATCGTACATCTTGAAGCAATTACTTCGAGAGCGAGGCAGCGTCAGAGGTTGCCGAGGGTGCAGACTCCGATTCAGATAACCAATTTTACAGGAGAAGCAGCAGCTGCGGATGGTGTTCAAGGCGAAGAAAGAAGGGTGGAGGTGGAGCAGAATGTTGTTGAGGAAAGAGTAGTTGAGAGTGTGAAAGGGGGAAAAAGAAAAAGTGCGCATTTAGTTGCGAAAGCTTTGGGGATTGAAGAGATTGATGATGGTAAAACGGAGGAGAGTAGTGGGAATTTTTTTGATTGTAATATATGTTTGGATATTGCTAGAGATCCTGTTTTGACGTGTTGTGGTCATTTGTTTTGTTGGCCGTGTTTTTATCAGTTGTCGTATGCGTATTCGAAAGCGAAGGAATGTCCTGTTTGTAAAGGAGAGGTCACTGAATCGGGTATTATTCCGATTTATGGGAATGGAAATGGTGGTGGTGATCGTCAGATGGAAATGAAAGAAGCCGGTTTAAGGGTTCCTCCTCGACCTAAGGCACCTAGAGTTGAGAGTCTTAGACAAAAGTTGATAAGCCGGGGAGCGTCTTCTTCTTCTATTGTACAAAGCCTTCGACGGTTTCATAACCGAATTGGTGGATTTGGAGAGCAAGTTCAGTTAGAAAGTTCTAATACAACAGCTGATAGAAATAATGGTTTCAAGGTTGCTGGGGCAAGGAGCTTCTTCATTTTCGATGCTTTCAACAGCATTAAATTCGGCAATGGTCACGGAATAGGAGGAAGCAGAGAGCAAAATCCTCGTGCTGTTAATAGAAGTTCAACTTTTAGTGTTGCTGCTACAAACGGGTCAGAGAGTCATGCTCCAGATGTTGTTGCCGTGACCAACTCTGCAGATGCAGCAACTTCTGTGTCTCCTTTATCTAGTAATGTTGACAATATTGCTGCTATAGGTTCAGAAACGCAGACAACTGATAGAAACGTTCAGATTAGTCCGCCAGACCCTTCTTCATCAAACGGCAGACGAAGAAATGGCATTTCAGCACAAGTTTCAAATGAACCAACAAGAAGAAGATTGAGGTGA 1182 0.4323 MDLDLNQEPMDQTSSSTAVVAFDSVLEELEAAEENIRNRIVHLEAITSRARQRQRLPRVQTPIQITNFTGEAAAADGVQGEERRVEVEQNVVEERVVESVKGGKRKSAHLVAKALGIEEIDDGKTEESSGNFFDCNICLDIARDPVLTCCGHLFCWPCFYQLSYAYSKAKECPVCKGEVTESGIIPIYGNGNGGGDRQMEMKEAGLRVPPRPKAPRVESLRQKLISRGASSSSIVQSLRRFHNRIGGFGEQVQLESSNTTADRNNGFKVAGARSFFIFDAFNSIKFGNGHGIGGSREQNPRAVNRSSTFSVAATNGSESHAPDVVAVTNSADAATSVSPLSSNVDNIAAIGSETQTTDRNVQISPPDPSSSNGRRRNGISAQVSNEPTRRRLR 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00890 393 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 232 IPR013083 -
Trre8g00890 393 MobiDBLite consensus disorder prediction 292 317 - -
Trre8g00890 393 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 106 296 IPR045103 GO:0005783|GO:0006511|GO:0061630
Trre8g00890 393 ProSiteProfiles Zinc finger RING-type profile. 135 176 IPR001841 -
Trre8g00890 393 MobiDBLite consensus disorder prediction 352 393 - -
Trre8g00890 393 Pfam Zinc finger, C3HC4 type (RING finger) 134 181 - -
Trre8g00890 393 SMART ring_2 135 175 IPR001841 -
Trre8g00890 393 MobiDBLite consensus disorder prediction 352 387 - -
Trre8g00890 393 MobiDBLite consensus disorder prediction 299 317 - -
Trre8g00890 393 Coils Coil 26 46 - -
Trre8g00890 393 SUPERFAMILY RING/U-box 131 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00890 Trre-Chr8 6446565 6447805 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00890 124 245 C3H Transcription Factor Family AT3G58030 52.846 8.88e-38 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00890 - - cam:101488454 474.552