Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00886 ATGTTTCTAAGGGCAAGTACTGGAGACAGTTACCGTTTTAGCGCATCTAGTACGCCTAGCAATTCAAGTGGAGGATCTGATGGAGATGATATTGAATCACGATCTGATGTTTACATATGGGGAGAGGTTTTTGCAGACAATTTTGCTTCTAAGACAGATGTGTTGATCCCTAAGCTCTTAGAGTCAAAACTTTATCTTGATGTTCATAACATTGCATCCGGTGCGCATCACGTTGCTATAGTAAACAAGAGAGGAGAGGTTTTCACTTGGGGAAAGGAATCTGGAGGAAGACTTGGTCATGGAATTGATAAAGATTTTGACAAGCCTAATCTAGTTGAGTTTCTTGAAGATGTTATTTTGGATATTGTTGCATGTGGAGAGTTTCATACATGTGCTGTGTCTAAATCTGATGACTTTTTCACCTGGGGTGATGGTGCACATAATGCTGGACTTCTTGGACATGGCAATGGGGCTAGTCACTGGATACCAAAGAGTGTCAATGGCTTTTTGGATGGACTTCAAGTCGTATCTGTTGCATGTGGCACGTGGCATTCAGCATTGGCAACCTCAAATGGGAAACTGTTTACCTTTGGAGATGGAACATTTGGTGTGTTAGGCCACGGTGATCAAGAGAGTGTATTGTATCCAAAGGAAGTACAACTATTAAGTGGACTGAAGACTATGAAGGTTGCTTGCGGAGTATGGCACACTGCAGCTATTGTTGAGGTTGTTTTTCAATCTGGTTCAAATGTTTCATCATGCAAACTCTTCACATGGGGTGACGGTGACAAATATCAATTAGGCCATGGAAACAAGGAAACATATCTGAAACCAACGCGTGTCTTGCCGCTTATTGAATATAATTTCCAGCAGATAGCATGTGGACACACCATGACTGTTGCTCTCACTACATCTGGTCATGTATTTGCAATGGGAAGCACGGAAAATGGTCAATTAGGAAATCCAAATTCTGCTGGAAAAGTACCTACTTTAGTTCAAGGTAAGTTGCTTGGTGAATTTGTTGAGGAAATATCATGTGGAGCACATCATGTTGCTGTTTTGACTTCAAAAAGTGAACTATATACATGGGGAAAAGGTTCTAACGGAAGATTAGGACATGGTGACACAGATGATAAAAAATCTCCTACACTTGTGGTAGCCTTGAAAGATAGGCATATAAAATATATCTCATGTGGTTCAAACTTTACATCTTGTATATGTATGCCTAAATCGGTCACTGGAACTGACCAATCTGTTTGCTTTGGTTGTAAACAAGCATTTGGTTTAACAAGAAAAAGATACAATTGTTATAATTGTGGATTGGTTTTCTGCTATACTTGTAGTTCTAAAAAGTCATTCAAAGCTGCACTGGCTCCAACATTTGAAAAACCTCATCGTGTATGTGATACTTGTTTTACTAAGCTTAAAGTTGTTGACATCAATGATTCTTCAAAGTTTAATGGAAAAATTACTCCTCATTGTTCCACAACTGGTAGGGAAGGATTGGACCAAAGTATTTTAAGGTCTACAAAAACTCTCTTCTCTTCTATAACTGAACCAGTAAAATACCATGAAATAAGGAATAATGGAACTGAATGTGGTACTACTTTCGTAAGAGCTTCTTTAGTTCCATCTCTTTTGCAATTGAAAGATATTGCATTTCCAAGTTCATTGAGTTCTACTCAAAGTGTTTTGAAGCCTTCTATACCCCCTAGATCATCACAAAGTCCCACATGTAGATCAAGCCTTCCACCAGCTTCTGCTAATCCAAAAATTTCTGGTGTTCTTATCAATAGTTTGAGAAGAGCAAATTATGTTTTGATCCAAAGAGTCTCGGATTTGCAGAGACAAATTCGAGGTTTGAAGCAGATAAGTGACGTGAAAGATGTGGAACTTCAGAAGCTTAATAAAAAGGCTAAGGAAGCTATTGCATGGGCGGCAGTGGAATCTTCTTGTCATACAGAAACAAAAGAATTTATTAAATCTACTAAACGTCAGTTGAAGGAAGTGACTGAGAAGCTACCAGTAGATATTCCAGAAACTAATATCTTGAGTACTATACACACTCGAGCTGAAGATTTTTTAAAAGAAATTTCAGAATCTGAAACATCAGAGTTGGAGTCCAAGCAACCAGAAGCACATGACATATCTGCTACAGACAGTGACTCTTCTAACCTGGAAAATATTAGTTTAGTGAAAGATGCTGACAGTGTAGAAGTTGATTCTTGTCTGGAAAAGTTAGTAGAGTCTTTGCAACAGAATGCACATGATATATCTACCCCGCCTAGTGGAACTTTTGAACTGCAAGATCATAGACTAGAACAAAATGCTGATATTTTAGGAGATGACCGTCGGCAAGATGAAGGAAATATCCTTGACGAAATTAACAAACCAACATTGGAGTCAAAGCAACAAAATTCACATGATATATCTACCCCGCAACGTGGAACTTTTGAACTGCAAGATCATAAAGTAGAACAAAATGTTGATGATGTTTTAGGAGATGACCGTTGTCAGAATGAAGGAAATATTCTTGACGAAATTAACAAACCAACATTGGAGTCAAAGCAACAAAATTCACCTGATATAACTACCTCAGATAGTGACACTTCTGAACTACAAGTACAACCAACATTGGAGTCAAAGCAACAAAATTCACCCGATATAACTACCTCAGATAGTGACACTTCTAAACTACAAGTACTCATACATGAAAAAATTGATAAGACTGCAAGGGTTGATCAATCTGAGGGTGGAATAAATGTCCGGCAAGAAAGTAATGGATCGACAATATCTATTGTTGGAGAAATGTTATCACCCCAAAACTCAGGAAATGGTTCAATATCACCACGGGACAGTTCAAGAGATGAGAGACTACAAGAAACACAAGTCTTTGAAAAATTTGAGTCTGGTGTTTATGTGTTGGTCGTGCTACGGGATGATGGAATCAAAATTTTTAAAAGAGTTAAATTCAGTAAGCGAAGGTTCACTGAAAGACAAGCAGAAGAATGGTGGAGCCATAACAAAGGTAGGGTTCTTAGCAAATACTGTCCAATCCATCAAAAGTTAAATGAACCATGTAATAACATTACACCAAATGTTAAAGAAAATATTGAGTCATCTCCTTCTTAG 3132 0.3796 MFLRASTGDSYRFSASSTPSNSSGGSDGDDIESRSDVYIWGEVFADNFASKTDVLIPKLLESKLYLDVHNIASGAHHVAIVNKRGEVFTWGKESGGRLGHGIDKDFDKPNLVEFLEDVILDIVACGEFHTCAVSKSDDFFTWGDGAHNAGLLGHGNGASHWIPKSVNGFLDGLQVVSVACGTWHSALATSNGKLFTFGDGTFGVLGHGDQESVLYPKEVQLLSGLKTMKVACGVWHTAAIVEVVFQSGSNVSSCKLFTWGDGDKYQLGHGNKETYLKPTRVLPLIEYNFQQIACGHTMTVALTTSGHVFAMGSTENGQLGNPNSAGKVPTLVQGKLLGEFVEEISCGAHHVAVLTSKSELYTWGKGSNGRLGHGDTDDKKSPTLVVALKDRHIKYISCGSNFTSCICMPKSVTGTDQSVCFGCKQAFGLTRKRYNCYNCGLVFCYTCSSKKSFKAALAPTFEKPHRVCDTCFTKLKVVDINDSSKFNGKITPHCSTTGREGLDQSILRSTKTLFSSITEPVKYHEIRNNGTECGTTFVRASLVPSLLQLKDIAFPSSLSSTQSVLKPSIPPRSSQSPTCRSSLPPASANPKISGVLINSLRRANYVLIQRVSDLQRQIRGLKQISDVKDVELQKLNKKAKEAIAWAAVESSCHTETKEFIKSTKRQLKEVTEKLPVDIPETNILSTIHTRAEDFLKEISESETSELESKQPEAHDISATDSDSSNLENISLVKDADSVEVDSCLEKLVESLQQNAHDISTPPSGTFELQDHRLEQNADILGDDRRQDEGNILDEINKPTLESKQQNSHDISTPQRGTFELQDHKVEQNVDDVLGDDRCQNEGNILDEINKPTLESKQQNSPDITTSDSDTSELQVQPTLESKQQNSPDITTSDSDTSKLQVLIHEKIDKTARVDQSEGGINVRQESNGSTISIVGEMLSPQNSGNGSISPRDSSRDERLQETQVFEKFESGVYVLVVLRDDGIKIFKRVKFSKRRFTERQAEEWWSHNKGRVLSKYCPIHQKLNEPCNNITPNVKENIESSPS 1043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00886 1043 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 306 357 IPR000408 -
Trre8g00886 1043 MobiDBLite consensus disorder prediction 9 28 - -
Trre8g00886 1043 CDD FYVE_like_SF 420 472 - -
Trre8g00886 1043 Pfam Regulator of chromosome condensation (RCC1) repeat 256 302 IPR000408 -
Trre8g00886 1043 Pfam Regulator of chromosome condensation (RCC1) repeat 191 240 IPR000408 -
Trre8g00886 1043 Pfam Regulator of chromosome condensation (RCC1) repeat 85 133 IPR000408 -
Trre8g00886 1043 Pfam Regulator of chromosome condensation (RCC1) repeat 140 187 IPR000408 -
Trre8g00886 1043 Pfam Regulator of chromosome condensation (RCC1) repeat 359 406 IPR000408 -
Trre8g00886 1043 Pfam Regulator of chromosome condensation (RCC1) repeat 305 354 IPR000408 -
Trre8g00886 1043 FunFam PH, RCC1 and FYVE domains-containing protein 1 6 245 - -
Trre8g00886 1043 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 358 409 IPR000408 -
Trre8g00886 1043 MobiDBLite consensus disorder prediction 1 29 - -
Trre8g00886 1043 Pfam FYVE zinc finger 415 475 IPR000306 GO:0046872
Trre8g00886 1043 MobiDBLite consensus disorder prediction 936 959 - -
Trre8g00886 1043 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 412 487 IPR013083 -
Trre8g00886 1043 Pfam Transcription factor BRX N-terminal domain 649 682 IPR027988 -
Trre8g00886 1043 MobiDBLite consensus disorder prediction 850 897 - -
Trre8g00886 1043 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 230 240 IPR000408 -
Trre8g00886 1043 MobiDBLite consensus disorder prediction 844 897 - -
Trre8g00886 1043 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 137 191 IPR000408 -
Trre8g00886 1043 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 85 136 IPR000408 -
Trre8g00886 1043 MobiDBLite consensus disorder prediction 797 814 - -
Trre8g00886 1043 PRINTS Chromosome condensation regulator RCC1 signature 178 194 IPR000408 -
Trre8g00886 1043 PRINTS Chromosome condensation regulator RCC1 signature 137 153 IPR000408 -
Trre8g00886 1043 PRINTS Chromosome condensation regulator RCC1 signature 353 374 IPR000408 -
Trre8g00886 1043 PRINTS Chromosome condensation regulator RCC1 signature 194 208 IPR000408 -
Trre8g00886 1043 PRINTS Chromosome condensation regulator RCC1 signature 295 313 IPR000408 -
Trre8g00886 1043 PRINTS Chromosome condensation regulator RCC1 signature 87 103 IPR000408 -
Trre8g00886 1043 Pfam Transcription factor regulating root and shoot growth via Pin3 962 1016 IPR013591 -
Trre8g00886 1043 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 414 476 IPR017455 -
Trre8g00886 1043 Gene3D - 253 411 IPR009091 -
Trre8g00886 1043 MobiDBLite consensus disorder prediction 700 723 - -
Trre8g00886 1043 SMART fyve_4 408 477 IPR000306 GO:0046872
Trre8g00886 1043 Gene3D - 11 252 IPR009091 -
Trre8g00886 1043 MobiDBLite consensus disorder prediction 561 586 - -
Trre8g00886 1043 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 192 243 IPR000408 -
Trre8g00886 1043 MobiDBLite consensus disorder prediction 936 950 - -
Trre8g00886 1043 SUPERFAMILY FYVE/PHD zinc finger 413 476 IPR011011 -
Trre8g00886 1043 ProSiteProfiles BRX domain profile. 962 1017 IPR013591 -
Trre8g00886 1043 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 254 305 IPR000408 -
Trre8g00886 1043 MobiDBLite consensus disorder prediction 795 814 - -
Trre8g00886 1043 SUPERFAMILY RCC1/BLIP-II 34 410 IPR009091 -
Trre8g00886 1043 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 27 664 - -
Trre8g00886 1043 MobiDBLite consensus disorder prediction 700 716 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00886 Trre-Chr8 6428857 6434275 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00886 940 1016 Major Intrinsic Protein MIP AT1G31880 31.250 3.67e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00886 - - mtr:11425711 1392.48