Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00870 ATGAAAAGTCATCATCATCATAATCTTCATTCTTCCTTCACTTCTAATAATAATTCCATTCAACCCTTAAGCTCAAATAATCAATTATCAAAATCTATGGCAATATCACCCCAAACATTCCCAACAACTAAACGACCACCTTCAGAAACGTCGTCGTTTATTACTCCAAACCTAACCAATTTCAATCTTCTTCACTCTCTATTACACCTTACACAACAAATATGTTCATTAAACGCAGCACCATGGTGTCGTTTTCTCTTAAACAAAATTTCCTCTTCAACAATCCATAAAACGCATCTACTAGAAATGTATATTGTGTTGCATAGGATTAAAAAGCTGATTGAAGATTGTTCTAATGGTAGTAAATTTTCTGTTTTGATGCAAATTGAAACTGTTGCTGATAATTTCAATAAACTTACCGGTGAATTATCGACGCTTCTTGATGTTTTTCCGATTCATGAGATGAACTTAAACGATGACGTTTTGGAGATTATTGTTTTGATCAGAAAACAGTGTTCAGAATCGAAGATGAATAAGCTTGGAGAAGAACAAATTAATCTCCGAAACGACGTCGTTTTTGTGCTTGAAGGAATCAAGAGAGAGATTGTTCCGAATGAAGAAAAGCTAGCTTCGATTTTCGAGAAATTGGAGATTCGTGATTCTTCAAGTTGCAGAAGTGAAATTGAGAATCTGCAAGAAGAAATTCAGAATCGAAACGAAGAACAATCGAAATCTGAGATCGTTTCATTGATCGGACTAGTTCGTTATGCGAAGTGTGTTCTCTTCGGAGCATCAACGCCGTCGTCGGGAAATGAGACTCTACGGCGGAATCAGTCGTTGGAGATTGTTGTTCCGTCGGATTACCGGTGTCCGATAAGTCTTGAACTGATGCGGGATCCTGTCGTCGTGGCAACAGGACAGACGTACGATCGTGGCTCAATTAAATTATGGATGGATTCTGGACACAACACGTGTCCTAAAACAGCTTTGGAAGCAACTAGAATGACGGCGACGTTTTTAGTCAACAAGTTGACTAACGGTTGTTTAGTTTCAGAATCTCGAGCTATGGAAGAAACGAACGCAGTTGTGTATGAGCTTCGGGTATTGGCGAAAACAGATTCAGAGAGCCGAGCCTGTATTGCTGAAGCGGGGGCTATAGAGATTTTGGTTCGGTTTTTAAGTTATGAAGTTGGTTCGCAACACCCGAACCTACAAGTTAATGCTGTGACAACGATTTTAAATCTTTCAATACTTGAAGCTAATAAGACAAGGATAATGGAAATTGACGGTGTGCTAAATGGAGTAGCGGAGGTTTTACGATCGGGTGCCACGTGGGAGGCGAAAGCAAATGCGGCTGCTACGGTGTTTAGCTTAACTGGAGTGGTTGCTTTTAGAAAGCGGTTAGGGAGGAAGACACGTGTCGTGAGTGGATTGGTTGAGTTGGCAAAGACTGGGCCCGAGGGTGCGAAAAGAGACGCGCTTGCGGCTATTTTGAATTTAGCAGCGGACCGTGAGACAGTGGCGAGGTTGGTTGAGAGTGGGGCGGTGGAAATGACGGCTGGGATTATGGCAGTGATGCCAGAGGAGGCGGTGACGATACTTGAAGCAGTGGTGAAGCGTGGAGGATTGGTAGCTGTCGCGGCGGCTTTCGTTGGGATTAAGAAATTGGGGACGGTGTTGAGGGAGGGATCAGAGAGGGCAAGAGAGAGTGCTGCGGCGACACTTGTGACAATGTGTAGGAAAGGTGGATCGGAGATTGTGGCGGAACTAGCTGGGATTCATGGTGTTGAAAGGGTGATTTGGGAGTTGATGGCAGTGGGGAGTGTGAGAGGCAGGAGGAAGGCGGCGACATTGTTGAGGATTTTGCGGCGGTGGGCCGCGGGTTTGGACGGTGGCGAAACGGAAGGTTTTACATCAACAAACACTTTTGTTAGGCTATGA 1941 0.4395 MKSHHHHNLHSSFTSNNNSIQPLSSNNQLSKSMAISPQTFPTTKRPPSETSSFITPNLTNFNLLHSLLHLTQQICSLNAAPWCRFLLNKISSSTIHKTHLLEMYIVLHRIKKLIEDCSNGSKFSVLMQIETVADNFNKLTGELSTLLDVFPIHEMNLNDDVLEIIVLIRKQCSESKMNKLGEEQINLRNDVVFVLEGIKREIVPNEEKLASIFEKLEIRDSSSCRSEIENLQEEIQNRNEEQSKSEIVSLIGLVRYAKCVLFGASTPSSGNETLRRNQSLEIVVPSDYRCPISLELMRDPVVVATGQTYDRGSIKLWMDSGHNTCPKTALEATRMTATFLVNKLTNGCLVSESRAMEETNAVVYELRVLAKTDSESRACIAEAGAIEILVRFLSYEVGSQHPNLQVNAVTTILNLSILEANKTRIMEIDGVLNGVAEVLRSGATWEAKANAAATVFSLTGVVAFRKRLGRKTRVVSGLVELAKTGPEGAKRDALAAILNLAADRETVARLVESGAVEMTAGIMAVMPEEAVTILEAVVKRGGLVAVAAAFVGIKKLGTVLREGSERARESAAATLVTMCRKGGSEIVAELAGIHGVERVIWELMAVGSVRGRRKAATLLRILRRWAAGLDGGETEGFTSTNTFVRL 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00870 646 SMART arm_5 373 417 IPR000225 GO:0005515
Trre8g00870 646 CDD RING-Ubox_PUB 285 328 IPR045210 -
Trre8g00870 646 Coils Coil 221 248 - -
Trre8g00870 646 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 276 339 IPR013083 -
Trre8g00870 646 SMART Ubox_2 287 349 IPR003613 GO:0004842|GO:0016567
Trre8g00870 646 SUPERFAMILY ARM repeat 359 622 IPR016024 -
Trre8g00870 646 ProSiteProfiles U-box domain profile. 283 356 IPR003613 GO:0004842|GO:0016567
Trre8g00870 646 MobiDBLite consensus disorder prediction 10 26 - -
Trre8g00870 646 PANTHER U BOX DOMAIN-CONTAINING 97 623 - -
Trre8g00870 646 MobiDBLite consensus disorder prediction 1 26 - -
Trre8g00870 646 Pfam U-box domain 284 333 IPR003613 GO:0004842|GO:0016567
Trre8g00870 646 Gene3D - 340 550 IPR011989 -
Trre8g00870 646 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 384 430 IPR000225 GO:0005515
Trre8g00870 646 Pfam Armadillo/beta-catenin-like repeat 373 416 IPR000225 GO:0005515
Trre8g00870 646 SUPERFAMILY RING/U-box 280 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00870 Trre-Chr8 6293683 6296535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00870 41 628 U-box Gene Family AT5G01830 50.681 0.0 597
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00870 - - tpra:123922727 1123.23