Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00868 ATGTATAAGGGAAGAATTGGAGGCAAAGCTCAACCTGGATATGTTGAAACTGATCCTTCTGGTCGATATGGACGTTTTAGGGATGTCCTTGGCAAAGGAGCAATGAAGGTAGTGTATAGGGCATTTGATGAAATCCTAGGAATAGAAGTGGCTTGGAACCAAATCAAGCTTGATGATGTCTTTCATTCACCAGACCAACTTCAACGCCTCTATTCAGAGGTTCATCTCTTAAAAAACTTGGATCATGATTCTATCATTACTTTTCATGGTACTTGGATTGATTCTGATTGTAGAACCTTCAACTTCATCACTGAATTGTTCACCTCCGGAACCCTAAGAGAGTATAGAAAGAAATACCCTCGTGTAGATATCAGAGCAATAAAGAATTGGGCTCGCCAGATTCTAAGTGGTTTGGAGTATTTGCATAGCCATGATCCTCCTGTGATACATAGAGACCTAAAATGTGATAATATATTTGTCAATGGCCATATGGGTAAACTCAAGATTGGTGATTTAGGCCTTGCAGCAATTCTTCGTAGTTCACAACATGCACACAGTGTCATAGGTACACCGGAATTTATGGCACCAGAATTGTATGAAGAGGAATATACTGAGTTGGTAGACATATATTCTTTTGGCATGTGTATGATTGAGTTGTTCACTTCAGAGTTCCCATATAGCGAATGCTCCAACCCAGCTCAAATATACAAGAAAGTTACATCTGGGAAACTACCAGCTGCATTTTACAAGATCCAAGATTTAGAAGCCCAAAAGTTTGTTGGGAAATGTTTGGCAAATGTAACAGAGAGGTTGTCAGCAAAAGAGCTTTTGTTGGACCCATTTTTAGCGACGGCCCAATGTGACTCGCCATTGCCTAGTCCAACATTACCTAGCAAACATTCTCAAAAACTCAATTTCAATGCAACAATGGCCAAAGAACAACCTTCACTGAATGTTCAAACAAAGAGTACACATATGACAATCACAGGGACTATGAATGAAGAGGATGACAATGTTTTCCTTAAAGTCAAAATTTCAAACAAAAATGGGCACACAAGAAACATATACTTTCCATTTGACATAAGAAATGACACTGCAATTGAGGTTGCAAATGAGATGGTCAAAGAACTAGAAATTAGTGACTTGGAGCCATTAGAGATTGCTGAAATGATTGAAGAAGAGATATCAACTATAGTTCCAACATGA 1206 0.3864 MYKGRIGGKAQPGYVETDPSGRYGRFRDVLGKGAMKVVYRAFDEILGIEVAWNQIKLDDVFHSPDQLQRLYSEVHLLKNLDHDSIITFHGTWIDSDCRTFNFITELFTSGTLREYRKKYPRVDIRAIKNWARQILSGLEYLHSHDPPVIHRDLKCDNIFVNGHMGKLKIGDLGLAAILRSSQHAHSVIGTPEFMAPELYEEEYTELVDIYSFGMCMIELFTSEFPYSECSNPAQIYKKVTSGKLPAAFYKIQDLEAQKFVGKCLANVTERLSAKELLLDPFLATAQCDSPLPSPTLPSKHSQKLNFNATMAKEQPSLNVQTKSTHMTITGTMNEEDDNVFLKVKISNKNGHTRNIYFPFDIRNDTAIEVANEMVKELEISDLEPLEIAEMIEEEISTIVPT 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00868 401 Gene3D Phosphorylase Kinase; domain 1 9 105 - -
Trre8g00868 401 Gene3D Transferase(Phosphotransferase) domain 1 107 288 - -
Trre8g00868 401 ProSiteProfiles Protein kinase domain profile. 24 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g00868 401 SUPERFAMILY Protein kinase-like (PK-like) 26 325 IPR011009 -
Trre8g00868 401 CDD STKc_WNK 22 282 - -
Trre8g00868 401 SMART serkin_6 24 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g00868 401 FunFam Probable serine/threonine-protein kinase WNK1 9 105 - -
Trre8g00868 401 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672|GO:0006468
Trre8g00868 401 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 11 400 - -
Trre8g00868 401 Pfam Protein kinase domain 28 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g00868 401 FunFam probable serine/threonine-protein kinase WNK9 107 287 - -
Trre8g00868 401 Gene3D - 335 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00868 Trre-Chr8 6265218 6269727 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00868 13 400 MAP Kinase Kinase Kinase AT3G51630 70.180 0.0 573
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Trre8g00868 Pkinase 1.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00868 K08867 - gmx:100816187 677.167