Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00849 ATGGAGTCAAGGTGTTGCATGAACGTGTTATGTGGTACATCTACGTCGATTCGGTGGCGTAAAGGTTGGCTACTTCGATCCGGTGAATTCGCCGATCTATGTGATAAGTGCGGTTCTGCTTACGATCAATCGGCATTTTGTGATATTTTCCATGCAAAAGATTCTGGTTGGAGAGAGTGTACTTCATGTGGCAAGCGTCTCCATTGTGGATGTGTTGCTTCGAAGTCACAGCTTGAAATACTCGATACTGGTGGTGTAAGCTGTATAACCTGCACAAGTAATTCAGGACTTCAACCAATTACTGGTAATGAAAAACCTAATGAATCAGAGACAGCAAAGGTAAAACATGTCAGTATGCAGCAATACATATCTCTGGCTAACCAATTAAATGCAAGGGGTATGCAAGTTGGGAATTATACAGAAAATGATGGACTGAGGTGCTGGCTCAAACCTCACCATGTTGATATGGATGGATCTTCTACAGAAATCAAACCAGAAGTTTTACCCTCTGTCGGAGAATTCGGAAGCACTTTGGTATCACAATTTCATCGTGAGTCAAATGGATCGTCTAGGACTGCCAAAGGAGAGAATTATAAGGCAGGCGACATGCAAGATATATATGAATCACTGGCACAGACAAATTTGAGTATGACCCTTGCTGCTCCTTTGGCAAATTCAAATCCCTTTCACAATGTCCTTGTTGATGAAAGAGAACAAAGCAAAATGTCACCTCCACTTTTATTGGCGTCTAGATCTCGCCATCTTTTACCTAAACCCCCTAGGCCAACTCTCTCTTCAGGCTTAGAAGCAAATGCAAGCATGGTATCCCAGGTTCGTATAGCAAGGCCTCCCGCCGAAGGACGGGGAAGGAATCAGTTGCTTCCGCGATATTGGCCTAGAATTACAGATCAAGAGTTGCAGCAAATATCGGGAGATTCAAATTCCACCATCGTGCCACTCTTTGAAAAGATGCTTAGCGCAAGTGATGCTGGTCGAATTGGTCGCCTAGTTCTCCCAAAAGCATGTGCTGAAGCATATTTCCCTCCTATCTCTCAACCTGAGGGCCTTCCTTTGCGAATCCAGGATGTGAAAGGAAAAGAATGGATGTTTCAATTTAGATTTTGGCCAAATAATAACAGCAGGATGTATGTTTTAGAAGGTGTAACGCCCTGTATCCAGTCTATGCAACTGCAAGCTGGGGATACTGTAACATTTAGCCGTATGGACCCTGAGGGGAAACTTATAATGGGGTTCAGGAAGGCAACAAATTCTGCTTCAGTACAGGAAACTTTTCCGTCTAATAAGCCCAATGGTTCTCATTCAAGTGAAACTTCCTATTCTGGTGTTTATGAGAATTTACCTATATTAAGTGGTTACTCTGGCCTTCTTCAGTCTCAAAAGGGATGTTCAGAAACCCACCTAAATGTGCTGTCTAAAAAGTGGAACTCAGTTGGTGGTGACATGGATTGGCATAATGTAGAAATGCCCGAAAGCAGGAAAAGAGATGCCTTGTCTTTGCCACCCGTGCTGGTTCCCGAGAAGAAAAGAACTCGGAATATTGGGTCAAAAAGTAAGAGGTTGCTTATTGATAGCCAGGATGCACTGGAGCTCAAACTTACTTGGGAAGAGGCTCAGGATTTACTTCGTCCACCTCCAGAAGTTAAGCCAAGTGTTGTCATGATTGAGGATCACTTATTTGAAGAATATGAAGAACCTCCTGTCTTTGGGAAGAAGAGTATTTTTGTGGTACGATCTAATGGGATAAATGAGCAGTGGACACAGTGTGATAGTTGCTTAAAATGGCGGAAGTTACCAGTTGATGTACTTATTCCCCCTAAGTGGACGTGTATGGAGAATTTTTGGGATCAAAGCAGGTGTTCATGTGCTGCTCCCAATGAATTGAACCCAAGAGAACTGGATAATCTTTTGAGAATGAACAAAGAATTCAAGAAACAAAGACTAGCAGCAGCAAGCCAGAGGCCAGCTCTGGAACATGAATCTTCTGGTCTTGATGCTTTGGCAAATGCTGTTGTACTTGGAGATGATGCAAGTGAATCTGGTACGACACCAGTCATGACCACTACAAAACATCCTCGTCATAGACCTGGGTGCTCCTGCATTGTCTGTATCCAGCCACCAAGTGGGAAGGGCAAACACAAACCTACATGCACCTGTAACGTCTGCATGACAGTTAAACGTCGGTTTAAAACCCTGATGATGCGAAAGAAGAAACGTCAATCTGAGCGTGAAGCTGAGATTGCTCAGAAAAATCAGCTATCATATAGGGCCAAGGATGAATCAGAAGTAGACAGCACCTCTCGACATTTAACTCCAGTTGATGGTTCAACTTCAGAGAATGAAGCAAGGTTGCCAAATGAGTTGGATTCAAAGATTCAAGACCAAGTGGCTGAAGCTGCCACGGGACAATTAGACTTGAATTGCCAACCGGACCGGGATGACATGCAAGCTGGACCAAACACTCTGAGCATGATGACTCTTCTTGAAGAAGCAAATCTCCCATTGGAGACATACCTGAAGCAAAATGGTCTTTCTAGCTTGATATCAGAGCAGCAAACAAATTCAGCTTCAAATGTGCAGGCACAAACAACCAATGAGAGTGAGGGAAGACAAAATGAGGATTGCAATACTGCTTCTGTAATTCATGAACAGGAAGGCAGTCATGAAGAAAACAGCGGGCAAGACCGAGACCAAAACAATTCACTTTCTTGA 2730 0.4348 MESRCCMNVLCGTSTSIRWRKGWLLRSGEFADLCDKCGSAYDQSAFCDIFHAKDSGWRECTSCGKRLHCGCVASKSQLEILDTGGVSCITCTSNSGLQPITGNEKPNESETAKVKHVSMQQYISLANQLNARGMQVGNYTENDGLRCWLKPHHVDMDGSSTEIKPEVLPSVGEFGSTLVSQFHRESNGSSRTAKGENYKAGDMQDIYESLAQTNLSMTLAAPLANSNPFHNVLVDEREQSKMSPPLLLASRSRHLLPKPPRPTLSSGLEANASMVSQVRIARPPAEGRGRNQLLPRYWPRITDQELQQISGDSNSTIVPLFEKMLSASDAGRIGRLVLPKACAEAYFPPISQPEGLPLRIQDVKGKEWMFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRMDPEGKLIMGFRKATNSASVQETFPSNKPNGSHSSETSYSGVYENLPILSGYSGLLQSQKGCSETHLNVLSKKWNSVGGDMDWHNVEMPESRKRDALSLPPVLVPEKKRTRNIGSKSKRLLIDSQDALELKLTWEEAQDLLRPPPEVKPSVVMIEDHLFEEYEEPPVFGKKSIFVVRSNGINEQWTQCDSCLKWRKLPVDVLIPPKWTCMENFWDQSRCSCAAPNELNPRELDNLLRMNKEFKKQRLAAASQRPALEHESSGLDALANAVVLGDDASESGTTPVMTTTKHPRHRPGCSCIVCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMMRKKKRQSEREAEIAQKNQLSYRAKDESEVDSTSRHLTPVDGSTSENEARLPNELDSKIQDQVAEAATGQLDLNCQPDRDDMQAGPNTLSMMTLLEEANLPLETYLKQNGLSSLISEQQTNSASNVQAQTTNESEGRQNEDCNTASVIHEQEGSHEENSGQDRDQNNSLS 909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00849 909 SMART B3_2 321 421 IPR003340 GO:0003677
Trre8g00849 909 MobiDBLite consensus disorder prediction 741 794 - -
Trre8g00849 909 Gene3D - 589 645 - -
Trre8g00849 909 MobiDBLite consensus disorder prediction 856 888 - -
Trre8g00849 909 FunFam B3 domain-containing transcription repressor VAL1 299 426 - -
Trre8g00849 909 CDD B3_DNA 319 420 IPR003340 GO:0003677
Trre8g00849 909 Pfam CW-type Zinc Finger 591 633 IPR011124 GO:0008270
Trre8g00849 909 ProSiteProfiles Zinc finger CW-type profile. 586 636 IPR011124 GO:0008270
Trre8g00849 909 Pfam B3 DNA binding domain 321 420 IPR003340 GO:0003677
Trre8g00849 909 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 3 861 - -
Trre8g00849 909 MobiDBLite consensus disorder prediction 759 773 - -
Trre8g00849 909 MobiDBLite consensus disorder prediction 856 909 - -
Trre8g00849 909 Gene3D - 299 426 IPR015300 -
Trre8g00849 909 ProSiteProfiles B3 DNA-binding domain profile. 321 422 IPR003340 GO:0003677
Trre8g00849 909 MobiDBLite consensus disorder prediction 774 789 - -
Trre8g00849 909 SUPERFAMILY DNA-binding pseudobarrel domain 318 420 IPR015300 -
Trre8g00849 909 MobiDBLite consensus disorder prediction 426 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00849 Trre-Chr8 6096173 6103296 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00849 1 884 B3 DNA Binding Superfamily AT4G32010 49.044 0.0 809
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre8g00849 B3 1.4e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00849 K09287 - gmx:100778833 1592.4