Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00846 ATGTTAGGGTTGATTGTGTTCAAAGCAGGTTTAGAAGATCCAAAAAACAAACTTTCTTCTTGGAATGAAGATGATTATAGTCCTTGCAATTGGGAAGGTGTCAAATGTGACCCTACAACAAATAGGGTATCTTCTCTTGTTCTTGATGGATTCTCTCTTTCAGGACATATTAGTAAAAGCCTTTTGAGATTGCAGTTCCTTCAAATTCTTTCACTTTCTAGGAACAACTTCACAGGGAAAATAAACCATGATCTTCTTCTTACTCTTTGGAATCTAAAAGTTGTTGATTTGAGTGAAAATAGTCTGTATGGTACAATTCCGGATGAACTTTTTCGACAATGTTGGTCGTTAAGAGTTTTATCGCTCGCGAAAAACAATCTCTCGGGTACGATTCCTGACTCTTTGAGTTCATGCTTCTCGTTAGCAAGTTTGAACTTTTCATCTAACCGATTAAGCGGTGAGTTACATTATGGAATGTGGTTTTTGAAGGAACTGCAATCGCTTGATCTCTCGAATAATTTGCTCGAAGGAGAGATTCCTGAAGGAATTCAAAATCTATATGACTTGAGAGAGTTAAGGCTAAGGAGGAACTTTTTCACCGGCAGGATACCGGAGAGTATAGGAAACTGTTTGCTTTTGAAGTTGATCGATTTTGGTGATAATCTTCTAAATGATGAAATTCCGGAGTCGATACAAAGACTCACCTCAAGCACATTTTTAAGTTTGCAAGGGAATTCTCTCAATGGAAGCATCCCACATTGGATAATAGAATTGAACAATCTTGAGATATTGGATCTTTCTTCTAATAGATTTTTTGGTTTGATTCCAAATGGTATTGGTGGTCTTAGAAGTTTGCAAGTGTTGAATTTTTCAAACAACAATATCTTTGGTTCTATTCCAGTGAGTATAAGAGAGCTTAAATCTTTGTATATACTTGATTTGAGTGATAACAAAATTAATGGAAGCATTCCTTGTGAAATAGAAGGAGCAATTTCACTTAATGAATTGAGGTTACAAAGAAATTTGTTAGGTGGAAGAATTCCAGTCCAAATTGCAAAATGTTCAGCACTCATATCTATGAATCTTGCACACAACAAGCTTATTGGTTCAATCCCTGCATCAATAGCAGACCTAACAAATCTTCAACATGCAGATTTTTCATGGAACAAACTCACTGGAACTTTACCTAAAAAGCTCACAAATCTTACACATCTTTCCTCATTCAATGTTTCCTATAACAATCTTCAAGGTGAATTACCAATTGGTGGATTCTTCAAAAAAATCTCTCCTTCATTTGTTTATGGAAATCCATTGTTATGTGGTTCTATTGTTAACCACTCTTGTTCATCTTATCATCCAAAACCTATTGTCTTAAATCCTAATTCAAATTACAACAATTCAAGAACTTCATTACAAAACCATCATCATCATAAGATAATACTTAGTATATCTGTTTTTATTGCTATTGGTGGAGCTATTTCTATTGTTGTTGGTGTTATTGTTGTTACTTTTTTGAATATTCATGTTAGGTCTTCAAATTCACATTATGATTCTCCATTTGGATTACCCGGTGGTAAGGACTATAGATCTTCGCCTGAAAAAGATCCAAAATGTGGAAAAGTTGTGATGTTTAACGGTGATGTTGAATTTACCGATGAGCCGAATAATCTTCTTAAAGAAGGTAATGAAATCGGCCGCGGTGGATTTGGAATTGTTTATTGTGTTGTCCTTCGAGATCAGAAGTCTGTTGCAATCAAGAAGCTTATAGGTTCGAGTTTGACAAAGCCACATGATGATTTTGAGAGAGAGGTTCAAAAACTTGGAAAAATTAGACATCAAAATCTTGTGGCACTTGAAGGGTATTATTGGAATTCAACATTTCAGCTTATTATTTATGAGTACTTTTCAAGAGGGAATTTGCATAAGCTTCTTCATGATGATAATAGCAAAATTGTGTTTTCTTGGAGTGCAAGGTTCAAGGTTATTTTAGGAATTGCAAAAGGGTTGGCCTATTTACACCAAATGAACATAATTCATTATAACATGAAATCAACTAATGTTTTCATTGATTTTTGTGATGAACCAAAAATTGGAGACTTTGGTTTGGTGAATTTATTGCCAATTTTAGACCATTGTGTTTTGAGCAGCAAAATTCAAAGTGCACTTGGATACACGGCTCCCGAGTTTGCTTGTCGAACAGTTAACATAACCGAAAAATGCGATGTATATGGTTTTGGAATTTTGGTTCTAGAAATTGTGAGTGGAAAAAAACCAGTGGAATATATGGATGATGATGTTGTTGTTCTATGTGACATGGTTAGGAGTTCATTGGACGATGGAAAAGTTGAGCAATGTATTGATGAGAAACTTGTTGGTAACTTTTCGCTAGAGGAAGCGATTCCTGTGATTAAATTGGGGTTGGTTTGTTCATCGCATGTACCATCAAATCGTCCGAATATGGCTGAGGTTGTTAACATATTAGAGACAATTGAATGCTCTTCGGAAGGACAACAAGAGGAATTACAATGA 2529 0.3511 MLGLIVFKAGLEDPKNKLSSWNEDDYSPCNWEGVKCDPTTNRVSSLVLDGFSLSGHISKSLLRLQFLQILSLSRNNFTGKINHDLLLTLWNLKVVDLSENSLYGTIPDELFRQCWSLRVLSLAKNNLSGTIPDSLSSCFSLASLNFSSNRLSGELHYGMWFLKELQSLDLSNNLLEGEIPEGIQNLYDLRELRLRRNFFTGRIPESIGNCLLLKLIDFGDNLLNDEIPESIQRLTSSTFLSLQGNSLNGSIPHWIIELNNLEILDLSSNRFFGLIPNGIGGLRSLQVLNFSNNNIFGSIPVSIRELKSLYILDLSDNKINGSIPCEIEGAISLNELRLQRNLLGGRIPVQIAKCSALISMNLAHNKLIGSIPASIADLTNLQHADFSWNKLTGTLPKKLTNLTHLSSFNVSYNNLQGELPIGGFFKKISPSFVYGNPLLCGSIVNHSCSSYHPKPIVLNPNSNYNNSRTSLQNHHHHKIILSISVFIAIGGAISIVVGVIVVTFLNIHVRSSNSHYDSPFGLPGGKDYRSSPEKDPKCGKVVMFNGDVEFTDEPNNLLKEGNEIGRGGFGIVYCVVLRDQKSVAIKKLIGSSLTKPHDDFEREVQKLGKIRHQNLVALEGYYWNSTFQLIIYEYFSRGNLHKLLHDDNSKIVFSWSARFKVILGIAKGLAYLHQMNIIHYNMKSTNVFIDFCDEPKIGDFGLVNLLPILDHCVLSSKIQSALGYTAPEFACRTVNITEKCDVYGFGILVLEIVSGKKPVEYMDDDVVVLCDMVRSSLDDGKVEQCIDEKLVGNFSLEEAIPVIKLGLVCSSHVPSNRPNMAEVVNILETIECSSEGQQEELQ 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00846 842 SUPERFAMILY Protein kinase-like (PK-like) 558 828 IPR011009 -
Trre8g00846 842 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 1 158 - -
Trre8g00846 842 ProSiteProfiles Protein kinase domain profile. 558 830 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g00846 842 ProSitePatterns Protein kinases ATP-binding region signature. 564 587 IPR017441 GO:0005524
Trre8g00846 842 SMART LRR_typ_2 282 306 IPR003591 -
Trre8g00846 842 SMART LRR_typ_2 186 210 IPR003591 -
Trre8g00846 842 SMART LRR_typ_2 402 426 IPR003591 -
Trre8g00846 842 SMART LRR_typ_2 162 185 IPR003591 -
Trre8g00846 842 SMART LRR_typ_2 89 113 IPR003591 -
Trre8g00846 842 SMART LRR_typ_2 258 281 IPR003591 -
Trre8g00846 842 FunFam Inactive leucine-rich repeat receptor-like protein kinase 159 253 - -
Trre8g00846 842 Gene3D Ribonuclease Inhibitor 3 111 IPR032675 -
Trre8g00846 842 Gene3D Phosphorylase Kinase; domain 1 547 634 - -
Trre8g00846 842 Gene3D Ribonuclease Inhibitor 187 454 IPR032675 -
Trre8g00846 842 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 635 836 - -
Trre8g00846 842 Pfam Leucine rich repeat N-terminal domain 4 37 IPR013210 -
Trre8g00846 842 Gene3D Transferase(Phosphotransferase) domain 1 635 842 - -
Trre8g00846 842 SMART LRR_sd22_2 306 329 - -
Trre8g00846 842 SMART LRR_sd22_2 258 290 - -
Trre8g00846 842 SMART LRR_sd22_2 378 404 - -
Trre8g00846 842 SMART LRR_sd22_2 162 185 - -
Trre8g00846 842 Pfam Protein kinase domain 560 823 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g00846 842 SUPERFAMILY L domain-like 6 247 - -
Trre8g00846 842 Pfam Leucine rich repeat 260 319 IPR001611 GO:0005515
Trre8g00846 842 Pfam Leucine rich repeat 91 151 IPR001611 GO:0005515
Trre8g00846 842 PANTHER UNNAMED PRODUCT 89 762 - -
Trre8g00846 842 FunFam Leucine-rich repeat receptor-like protein kinase PXC2 257 451 - -
Trre8g00846 842 Pfam Leucine Rich Repeat 189 210 IPR001611 GO:0005515
Trre8g00846 842 Pfam Leucine Rich Repeat 165 186 IPR001611 GO:0005515
Trre8g00846 842 Gene3D Ribonuclease Inhibitor 112 186 IPR032675 -
Trre8g00846 842 PRINTS Leucine-rich repeat signature 258 271 - -
Trre8g00846 842 PRINTS Leucine-rich repeat signature 165 178 - -
Trre8g00846 842 SUPERFAMILY L domain-like 194 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00846 Trre-Chr8 6073916 6076996 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00846 1 841 Receptor kinase-like Gene Family AT3G56370 49.412 0.0 832
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Trre8g00846 Pkinase 2.6e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00846 - - gmx:100813535 996.882