Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00845 ATGCAAGATCAATTCATCATCATCCTATCTTTGTTTCTTGTTCTTTTTAATCCATTCCTAGTGATCTCACTATACCAACCTTTCAATGAAGACATGTTAGGGTTGATTGTGTTCAAAGCAGGTTTAGAAGATCCAAAAAACAAACTTTCTTCTTGGAATGAAGATGATTATAGTCCTTGCAATTGGGAAGGTGTCAAATGTGACCCTACAACAAATAGGGTATCTTCTCTTGTTCTTGATGGATTCTCTCTTTCAGGACATATTAGTAAAAGCCTTTTGAGATTGCAGTTCCTTCAAATTCTTTCACTTTCTAGGAACAACTTCACAGGGAAAATAAACCATGATCTTCTTCTTACTCTTTGGAATCTAAAAGTTGTTGATTTGAGTGAAAATAGTCTGTATGGTACAATTCCGGATGAACTTTTTCGACAATGTTGGTCGTTAAGAGTTTTATCGCTCGCGAAAAACAATCTCTCGGGTACGATTCCTGACTCTTTGAGTTCATGCTTCTCGTTAGCAAGTTTGAACTTTTCATCTAACCGATTAAGCGGTGAGTTACATTATGGAATGTGGTTTTTGAAGGAACTGCAATCGCTTGATCTCTCGAATAATTTGCTCGAAGGAGAGATTCCTGAAGGAATTCAAAATCTATATGACTTGAGAGAGTTAAGGCTAAGGAGGAACTTTTTCACCGGCAGGATACCGGAGAGTATAGGAAACTGTTTGCTTTTGAAGTTGATCGATTTTGGTGATAATCTTCTAAATGATGAAATTCCGGAGTCGATACAAAGACTCACCTCAAGCACATTTTTAAGTTTGCAAGGGAATTCTCTCAATGGAAGCATCCCACATTGGATAATAGAATTGAACAATCTTGAGATATTGGATCTTTCTTCTAATAGATTTTTTGGTTTGATTCCAAATGGTATTGGTGGTCTTAGAAGTTTGCAAGTGTTGAATTTTTCAAACAACAATATCTTTGGTTCTATTCCAGTGAGTATAAGAGAGCTTAAATCTTTGTATATACTTGATTTGAGTGATAACAAAATTAATGGAAGCATTCCTTGTGAAATAGAAGGAGCAATTTCACTTAATGAATTGAGGTTACAAAGAAATTTGTTAGGTGGAAGAATTCCAGTCCAAATTGCAAAATGTTCAGCACTCATATCTATGAATCTTGCACACAACAAGCTTATTGGTTCAATCCCTGCATCAATAGCAGACCTAACAAATCTTCAACATGCAGATTTTTCATGGAACAAACTCACTGGAACTTTACCTAAAAAGCTCACAAATCTTACACATCTTTCCTCATTCAATGTTTCCTATAACAATCTTCAAGGTGAATTACCAATTGGTGGATTCTTCAAAAAAATCTCTCCTTCATTTGTTTATGGAAATCCATTGTTATGTGGTTCTATTGTTAACCACTCTTGTTCATCTTATCATCCAAAACCTATTGTCTTAAATCCTAATTCAAATTACAACAATTCAAGAACTTCATTACAAAACCATCATCATCATAAGATAATACTTAGTATATCTGTTTTTATTGCTATTGGTGGAGCTATTTCTATTGTTGTTGGTGTTATTGTTGTTACTTTTTTGAATATTCATGTTAGGTCTTCAAATTCACATTATGATTCTCCATTTGGATTACCCGGTGGTAAGGACTATAGATCTTCGCCTGAAAAAGATCCAAAATGTGGAAAAGTTGTGATGTTTAACGGTGATGTTGAATTTACCGATGAGCCGAATAATCTTCTTAAAGAAGGTAATGAAATCGGCCGCGGTGGATTTGGAATTGTTTATTGTGTTGTCCTTCGAGATCAGAAGTCTGTTGCAATCAAGAAGCTTATAGGTTCGAGTTTGACAAAGCCACATGATGATTTTGAGAGAGAGGTTCAAAAACTTGGAAAAATTAGACATCAAAATCTTGTGGCACTTGAAGGGTATTATTGGAATTCAACATTTCAGCTTATTATTTATGAGTACTTTTCAAGAGGGAATTTGCATAAGCTTCTTCATGATGATAATAGCAAAATTGTGTTTTCTTGGAGTGCAAGGTTCAAGGTTATTTTAGGAATTGCAAAAGGGTTGGCCTATTTACACCAAATGAACATAATTCATTATAACATGAAATCAACTAATGTTTTCATTGATTTTTGTGATGAACCAAAAATTGGAGACTTTGGTTTGGTGAATTTATTGCCAATTTTAGACCATTGTGTTTTGAGCAGCAAAATTCAAAGTGCACTTGGATACACGGCTCCCGAGTTTGCTTGTCGAACAGTTAACATAACCGAAAAATGCGATGTATATGGTTTTGGAATTTTGGTTCTAGAAATTGTGAGTGGAAAAAAACCAGTGGAATATATGGATGATGATGTTGTTGTTCTATGTGACATGGTTAGGAGTTCATTGGACGATGGAAAAGTTGAGCAATGTATTGATGAGAAACTTGTTGGTAACTTTTCGCTAGAGGAAGCGATTCCTGTGATTAAATTGGGGTTGGTTTGTTCATCGCATGTACCATCAAATCGTCCGAATATGGCTGAGGTTGTTAACATATTAGAGACAATTGAATGCTCTTCGGAAGGACAACAAGAGGAATTACAATGA 2622 0.3505 MQDQFIIILSLFLVLFNPFLVISLYQPFNEDMLGLIVFKAGLEDPKNKLSSWNEDDYSPCNWEGVKCDPTTNRVSSLVLDGFSLSGHISKSLLRLQFLQILSLSRNNFTGKINHDLLLTLWNLKVVDLSENSLYGTIPDELFRQCWSLRVLSLAKNNLSGTIPDSLSSCFSLASLNFSSNRLSGELHYGMWFLKELQSLDLSNNLLEGEIPEGIQNLYDLRELRLRRNFFTGRIPESIGNCLLLKLIDFGDNLLNDEIPESIQRLTSSTFLSLQGNSLNGSIPHWIIELNNLEILDLSSNRFFGLIPNGIGGLRSLQVLNFSNNNIFGSIPVSIRELKSLYILDLSDNKINGSIPCEIEGAISLNELRLQRNLLGGRIPVQIAKCSALISMNLAHNKLIGSIPASIADLTNLQHADFSWNKLTGTLPKKLTNLTHLSSFNVSYNNLQGELPIGGFFKKISPSFVYGNPLLCGSIVNHSCSSYHPKPIVLNPNSNYNNSRTSLQNHHHHKIILSISVFIAIGGAISIVVGVIVVTFLNIHVRSSNSHYDSPFGLPGGKDYRSSPEKDPKCGKVVMFNGDVEFTDEPNNLLKEGNEIGRGGFGIVYCVVLRDQKSVAIKKLIGSSLTKPHDDFEREVQKLGKIRHQNLVALEGYYWNSTFQLIIYEYFSRGNLHKLLHDDNSKIVFSWSARFKVILGIAKGLAYLHQMNIIHYNMKSTNVFIDFCDEPKIGDFGLVNLLPILDHCVLSSKIQSALGYTAPEFACRTVNITEKCDVYGFGILVLEIVSGKKPVEYMDDDVVVLCDMVRSSLDDGKVEQCIDEKLVGNFSLEEAIPVIKLGLVCSSHVPSNRPNMAEVVNILETIECSSEGQQEELQ 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00845 873 Pfam Leucine Rich Repeat 196 217 IPR001611 GO:0005515
Trre8g00845 873 Pfam Leucine Rich Repeat 220 241 IPR001611 GO:0005515
Trre8g00845 873 Pfam Protein kinase domain 591 854 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g00845 873 PRINTS Leucine-rich repeat signature 196 209 - -
Trre8g00845 873 PRINTS Leucine-rich repeat signature 289 302 - -
Trre8g00845 873 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 82 858 - -
Trre8g00845 873 FunFam Inactive leucine-rich repeat receptor-like protein kinase 190 284 - -
Trre8g00845 873 Gene3D Ribonuclease Inhibitor 26 112 IPR032675 -
Trre8g00845 873 Gene3D Ribonuclease Inhibitor 122 485 IPR032675 -
Trre8g00845 873 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 666 867 - -
Trre8g00845 873 Gene3D Phosphorylase Kinase; domain 1 578 665 - -
Trre8g00845 873 Pfam Leucine rich repeat 122 182 IPR001611 GO:0005515
Trre8g00845 873 Pfam Leucine rich repeat 291 350 IPR001611 GO:0005515
Trre8g00845 873 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 28 189 - -
Trre8g00845 873 SMART LRR_typ_2 193 216 IPR003591 -
Trre8g00845 873 SMART LRR_typ_2 120 144 IPR003591 -
Trre8g00845 873 SMART LRR_typ_2 313 337 IPR003591 -
Trre8g00845 873 SMART LRR_typ_2 289 312 IPR003591 -
Trre8g00845 873 SMART LRR_typ_2 217 241 IPR003591 -
Trre8g00845 873 SMART LRR_typ_2 433 457 IPR003591 -
Trre8g00845 873 SUPERFAMILY L domain-like 221 472 - -
Trre8g00845 873 FunFam Leucine-rich repeat receptor-like protein kinase PXC2 288 482 - -
Trre8g00845 873 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Trre8g00845 873 ProSiteProfiles Protein kinase domain profile. 589 861 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g00845 873 SMART LRR_sd22_2 193 216 - -
Trre8g00845 873 SMART LRR_sd22_2 409 435 - -
Trre8g00845 873 SMART LRR_sd22_2 337 360 - -
Trre8g00845 873 SMART LRR_sd22_2 289 321 - -
Trre8g00845 873 SUPERFAMILY Protein kinase-like (PK-like) 589 859 IPR011009 -
Trre8g00845 873 SUPERFAMILY L domain-like 31 278 - -
Trre8g00845 873 Gene3D Transferase(Phosphotransferase) domain 1 666 873 - -
Trre8g00845 873 ProSitePatterns Protein kinases ATP-binding region signature. 595 618 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00845 Trre-Chr8 6073823 6076996 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00845 21 872 Receptor kinase-like Gene Family AT3G56370 49.471 0.0 842
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Trre8g00845 Pkinase 2.8e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00845 - - gmx:100813535 1012.68