Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00842 ATGTTAACCCCTTGTTATGGTCTCAACCGTAAATTGTTTAATGTCTCTCAAATTCAAAGTGATAATAATGAATGGCAAATGGCAATAGCTACATGGTATGGACCACCAGATGGTGCTGGATCGGATGGAGGTGCATGTGGATATGTTGATAGTGTAGAGAACCCTCCACTTAATAAAATGATATCAGCTGGAGGTCCATCTCTTTTTTATGGAGGCAAAGGATGTGGTGCTTGTTATGAGGTGAAATGCAATGAAAATAGTGCATGCTCAGGAAATGCCATGACTGTGATGATAACTGATAATTGCCCTGAATGTGTAGAGTCTGCCCATTTTGATCTAAGTGGAACTGCCTTTGGTTCCATTGCAAAACAAGGTCAAGCTCAAAATCTTCGCAATGCTGGAAAAATTAATATTCAATACAGAAGGGTTGCATGCTCTTTTGGGAAATCAATAGCCTTTAGAGTTGATAGTGGATCCAACCCATTCTATTTTGCTACGGAAATAGAATATGAAAATGGAGATGGTGACATTGTAGATGTTGAATTGAGCCAATCAAACACATGGCTTCCAATGCAACGTTCTTGGGGTGCAAGATGGGCTTTGAACAAAGGTTCAATATTGCAAACTCCATTTTCCATTAAGCTCACAGAAAGTGGAAATGGAATAGACAAAACCATAGTAGCTTATAATGTTATCCCAAAAAATTGGCAACCTGGTCAAGTTTATCGTTCAGTGGTTAATTTCTAG 747 0.3882 MLTPCYGLNRKLFNVSQIQSDNNEWQMAIATWYGPPDGAGSDGGACGYVDSVENPPLNKMISAGGPSLFYGGKGCGACYEVKCNENSACSGNAMTVMITDNCPECVESAHFDLSGTAFGSIAKQGQAQNLRNAGKINIQYRRVACSFGKSIAFRVDSGSNPFYFATEIEYENGDGDIVDVELSQSNTWLPMQRSWGARWALNKGSILQTPFSIKLTESGNGIDKTIVAYNVIPKNWQPGQVYRSVVNF 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00842 248 SUPERFAMILY PHL pollen allergen 149 244 IPR036749 -
Trre8g00842 248 Pfam Lytic transglycolase 62 140 IPR009009 -
Trre8g00842 248 PRINTS Major pollen allergen Lol pI signature 63 74 IPR005795 GO:0005576|GO:0019953
Trre8g00842 248 PRINTS Major pollen allergen Lol pI signature 169 184 IPR005795 GO:0005576|GO:0019953
Trre8g00842 248 PRINTS Major pollen allergen Lol pI signature 100 115 IPR005795 GO:0005576|GO:0019953
Trre8g00842 248 PRINTS Major pollen allergen Lol pI signature 153 168 IPR005795 GO:0005576|GO:0019953
Trre8g00842 248 PRINTS Major pollen allergen Lol pI signature 122 137 IPR005795 GO:0005576|GO:0019953
Trre8g00842 248 PRINTS Major pollen allergen Lol pI signature 83 93 IPR005795 GO:0005576|GO:0019953
Trre8g00842 248 PRINTS Major pollen allergen Lol pI signature 220 237 IPR005795 GO:0005576|GO:0019953
Trre8g00842 248 Gene3D - 11 146 IPR036908 -
Trre8g00842 248 PANTHER EXPANSIN-B3 20 248 - -
Trre8g00842 248 SMART dpbb_1 61 140 IPR007112 -
Trre8g00842 248 Pfam Expansin C-terminal domain 151 233 IPR007117 -
Trre8g00842 248 PRINTS Expansin/Lol pI family signature 24 39 IPR007118 GO:0005576
Trre8g00842 248 PRINTS Expansin/Lol pI family signature 188 202 IPR007118 GO:0005576
Trre8g00842 248 PRINTS Expansin/Lol pI family signature 133 149 IPR007118 GO:0005576
Trre8g00842 248 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Trre8g00842 248 PRINTS Expansin/Lol pI family signature 42 60 IPR007118 GO:0005576
Trre8g00842 248 PRINTS Expansin/Lol pI family signature 230 244 IPR007118 GO:0005576
Trre8g00842 248 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 43 150 IPR007112 -
Trre8g00842 248 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 162 244 IPR007117 -
Trre8g00842 248 SUPERFAMILY Barwin-like endoglucanases 20 147 IPR036908 -
Trre8g00842 248 Gene3D - 147 248 IPR036749 -
Trre8g00842 248 CDD DPBB_EXPB_N 25 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00842 Trre-Chr8 6039492 6042113 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00842 2 248 Expansin Gene Family AT1G65680 54.762 3.69e-94 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00842 - - gmx:100786475 356.681