Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00841 ATGGATATTAATGTTCTTCATTGCATGATTTCTTTTGTAATACTTTATTCTCTTATGTTAACCCCTTGTTATGGTCTCAACCGTAAATTGTTTAATGTCTCTCAAATTCAAAGTGATAATAATGAATGGCAAATGGCAATAGCTACATGGTATGGACCACCAGATGGTGCTGGATCGGATGGAGGTGCATGTGGATATGTTGATAGTGTAGAGAACCCTCCACTTAATAAAATGATATCAGCTGGAGGTCCATCTCTTTTTTATGGAGGCAAAGGATGTGGTGCTTGTTATGAGGTGAAATGCAATGAAAATAGTGCATGCTCAGGAAATGCCATGACTGTGATGATAACTGATAATTGCCCTGAATGTGTAGAGTCTGCCCATTTTGATCTAAGTGGAACTGCCTTTGGTTCCATTGCAAAACAAGGTCAAGCTCAAAATCTTCGCAATGCTGGAAAAATTAATATTCAATACAGAAGGGTTGCATGCTCTTTTGGGAAATCAATAGCCTTTAGAGTTGATAGTGGATCCAACCCATTCTATTTTGCTACGGAAATAGAATATGAAAATGGAGATGGTGACATTGTAGATGTTGAATTGAGCCAATCAAACACATGGCTTCCAATGCAACGTTCTTGGGGTGCAAGATGGGCTTTGAACAAAGGTTCAATATTGCAAACTCCATTTTCCATTAAGCTCACAGAAAGTGGAAATGGAATAGACAAAACCATAGTAGCTTATAATGTTATCCCAAAAAATTGGCAACCTGGTCAAGTTTATCGTTCAGTGGTTAATTTCTAG 801 0.3783 MDINVLHCMISFVILYSLMLTPCYGLNRKLFNVSQIQSDNNEWQMAIATWYGPPDGAGSDGGACGYVDSVENPPLNKMISAGGPSLFYGGKGCGACYEVKCNENSACSGNAMTVMITDNCPECVESAHFDLSGTAFGSIAKQGQAQNLRNAGKINIQYRRVACSFGKSIAFRVDSGSNPFYFATEIEYENGDGDIVDVELSQSNTWLPMQRSWGARWALNKGSILQTPFSIKLTESGNGIDKTIVAYNVIPKNWQPGQVYRSVVNF 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00841 266 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 61 168 IPR007112 -
Trre8g00841 266 SUPERFAMILY PHL pollen allergen 167 262 IPR036749 -
Trre8g00841 266 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576
Trre8g00841 266 PRINTS Expansin/Lol pI family signature 151 167 IPR007118 GO:0005576
Trre8g00841 266 PRINTS Expansin/Lol pI family signature 42 57 IPR007118 GO:0005576
Trre8g00841 266 PRINTS Expansin/Lol pI family signature 83 101 IPR007118 GO:0005576
Trre8g00841 266 PRINTS Expansin/Lol pI family signature 206 220 IPR007118 GO:0005576
Trre8g00841 266 PRINTS Expansin/Lol pI family signature 248 262 IPR007118 GO:0005576
Trre8g00841 266 Pfam Lytic transglycolase 80 158 IPR009009 -
Trre8g00841 266 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 180 262 IPR007117 -
Trre8g00841 266 CDD DPBB_EXPB_N 43 163 - -
Trre8g00841 266 Gene3D - 165 266 IPR036749 -
Trre8g00841 266 PANTHER EXPANSIN-B3 18 266 - -
Trre8g00841 266 Pfam Expansin C-terminal domain 169 251 IPR007117 -
Trre8g00841 266 PRINTS Major pollen allergen Lol pI signature 140 155 IPR005795 GO:0005576|GO:0019953
Trre8g00841 266 PRINTS Major pollen allergen Lol pI signature 171 186 IPR005795 GO:0005576|GO:0019953
Trre8g00841 266 PRINTS Major pollen allergen Lol pI signature 238 255 IPR005795 GO:0005576|GO:0019953
Trre8g00841 266 PRINTS Major pollen allergen Lol pI signature 81 92 IPR005795 GO:0005576|GO:0019953
Trre8g00841 266 PRINTS Major pollen allergen Lol pI signature 187 202 IPR005795 GO:0005576|GO:0019953
Trre8g00841 266 PRINTS Major pollen allergen Lol pI signature 118 133 IPR005795 GO:0005576|GO:0019953
Trre8g00841 266 PRINTS Major pollen allergen Lol pI signature 101 111 IPR005795 GO:0005576|GO:0019953
Trre8g00841 266 SUPERFAMILY Barwin-like endoglucanases 38 165 IPR036908 -
Trre8g00841 266 Gene3D - 29 164 IPR036908 -
Trre8g00841 266 SMART dpbb_1 79 158 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00841 Trre-Chr8 6039492 6042167 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00841 20 266 Expansin Gene Family AT1G65680 54.762 4.22e-94 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00841 - - gmx:100786475 365.925