Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00840 ATGGCTTTGATTGTGGATCAACAATCAAACTTCAAACACTTTTGTAAAATTTGCAAAAAAGGCTTTGGATGTGGAAGAGCATTAGGAGGACATATGAGAGCTCATGGCATAGGCGACGAAACCGGTCAAATGGATGACGATGATCCGGCGAGCGATTGGGAAGGTGTCAATGTCCCACAAACAAGTAACAAACGCATGTATTCTCTAAGAACAAATCCCAATAAGCTAAAAAGTTGTAGGGTGTGTGAGCATTGTGGCAAAGAATTTTTCTCTTGGAAATCGTTTCTCGAACATGGAAAATGCAACTCCGACGATGCTGATGAAGAGTCTCTTGTATCCTCTCCAGAATCCGACACCATGGCAGACGATGATGATAGTGTCGGTGGCATGAGAGGATGCGGCTGGTCAAAGAGGAAAAGGTCGTTGCGAACTAAAGTAGGAAGTTACAATAATAATTTTAATTGTCCTTCAACCGAAGAAGAAGACTTAGCAAATTGTTTAATGATGTTGTCCAATGCTATTGTTGACCCTCTTGTGGTTGAACCTGAAGAATCATGTGCCTCAGCTAGCAAAGATGAAGAAAGAAGAAACCCTATGAATTTCATTGCACCATTGGCTTATAGAATCCCCTATGAAAACACCACCAACAACAATAACAACAAAGCCAAAGGTGTTGCTAAAGGGTTATTTGAATGCAAAGCATGCAAAAAAGTTTTCAACTCACATCAAGCATTAGGTGGCCATAGAGCAAGTCACAAAAAGGTTAAGGGATGTTTTGCAGCAAGACTTGATCAAAACCATGATGATAATATTGTTGAGGATGATGCAATCACACATGAAGAATTTTTCCCTTCAAAATCAAACACAACCCAACAATTTGATCAAGGGACCTCCAATAACCCTACATTGATGGCTTCTTCTTCCAAGAGAAAAGCCAAAGTGCATGAATGCTCAATTTGTCATAGGAGTTTCTCTTCTGGACAAGCCTTAGGTGGACACAAAAGATGTCATTGGATCACATCAAATGCTCCGGACACATCAACATTGGCTAGGTTTCAACAATTTCAAGACCATATTGAACAAATACCTAAATTTGATAACTCTTCCGAGCCAATTGATCTCAAACTTGACCTTAATCTTCCGGCTCCTACCACCAATACACAAATTTACTTGCAACCACCGTGGAGCGCAAATGCAAGTGCGACAAAGGACAAAATCATCAAAGAAGATAACAATAGCCAATCTATGAATCAACAAAATCAAAACAACAACAACCTAGTCGATCAAAATAACGACAATAATAATGATAATAACAAAAATAACAACCTTAATACTTTGGTACAAAATGTTGATAATGAAGATGATAGAAAACCCAAGTTGGCAAAACTAAGTGAGTTAAAGGATGTCATCAATATTGGTGGAAGTTCTTCACCATGGTTGCAAGTGGGAATTGGTGCAACAACTGATGTGAGGAATGATACGTAA 1485 0.3892 MALIVDQQSNFKHFCKICKKGFGCGRALGGHMRAHGIGDETGQMDDDDPASDWEGVNVPQTSNKRMYSLRTNPNKLKSCRVCEHCGKEFFSWKSFLEHGKCNSDDADEESLVSSPESDTMADDDDSVGGMRGCGWSKRKRSLRTKVGSYNNNFNCPSTEEEDLANCLMMLSNAIVDPLVVEPEESCASASKDEERRNPMNFIAPLAYRIPYENTTNNNNNKAKGVAKGLFECKACKKVFNSHQALGGHRASHKKVKGCFAARLDQNHDDNIVEDDAITHEEFFPSKSNTTQQFDQGTSNNPTLMASSSKRKAKVHECSICHRSFSSGQALGGHKRCHWITSNAPDTSTLARFQQFQDHIEQIPKFDNSSEPIDLKLDLNLPAPTTNTQIYLQPPWSANASATKDKIIKEDNNSQSMNQQNQNNNNLVDQNNDNNNDNNKNNNLNTLVQNVDNEDDRKPKLAKLSELKDVINIGGSSSPWLQVGIGATTDVRNDT 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00840 494 MobiDBLite consensus disorder prediction 413 455 - -
Trre8g00840 494 Gene3D Classic Zinc Finger 11 101 - -
Trre8g00840 494 SMART c2h2final6 230 252 IPR013087 -
Trre8g00840 494 SMART c2h2final6 80 100 IPR013087 -
Trre8g00840 494 SMART c2h2final6 13 35 IPR013087 -
Trre8g00840 494 SMART c2h2final6 315 337 IPR013087 -
Trre8g00840 494 MobiDBLite consensus disorder prediction 106 128 - -
Trre8g00840 494 ProSitePatterns Zinc finger C2H2 type domain signature. 232 252 IPR013087 -
Trre8g00840 494 ProSitePatterns Zinc finger C2H2 type domain signature. 317 337 IPR013087 -
Trre8g00840 494 ProSitePatterns Zinc finger C2H2 type domain signature. 15 35 IPR013087 -
Trre8g00840 494 SUPERFAMILY beta-beta-alpha zinc fingers 229 337 IPR036236 -
Trre8g00840 494 ProSiteProfiles Zinc finger C2H2 type domain profile. 230 257 IPR013087 -
Trre8g00840 494 MobiDBLite consensus disorder prediction 413 449 - -
Trre8g00840 494 Pfam C2H2-type zinc finger 314 339 - -
Trre8g00840 494 Pfam C2H2-type zinc finger 230 254 - -
Trre8g00840 494 Pfam C2H2-type zinc finger 13 35 - -
Trre8g00840 494 SUPERFAMILY beta-beta-alpha zinc fingers 13 99 IPR036236 -
Trre8g00840 494 ProSiteProfiles Zinc finger C2H2 type domain profile. 315 337 IPR013087 -
Trre8g00840 494 Gene3D Classic Zinc Finger 227 337 - -
Trre8g00840 494 Coils Coil 416 453 - -
Trre8g00840 494 PANTHER OS02G0659100 PROTEIN 2 491 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00840 Trre-Chr8 6033003 6034487 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00840 137 380 C2H2 Transcription Factor Family AT1G02040 34.940 2.28e-32 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre8g00840 zf-C2H2_6 1.6e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00840 - - gmx:100793846 678.322