Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00839 ATGGAGAAGCATAAGTGCAAACTCTGTTTCAGAAGTTTCTCTAATGGAAAAGCTTTAGGTGGACACATGAGATCACACATGATGAACCTACCAATTCCACCAAAACAAAACAATTCACCACCGCCGCCGATGATTCAACTCAGTTTCGAAGCTGAGTCGGGTTCATCACCGTCATCCTCTTCATTCTATGGTCTAAGGGAGAATCCGAAGCGAAGCTTCCGATTCACAGATCCCAATCAAATCATCGACGCTGGCTCGATAATTCTCCAAGAAGACGGAGGAAGCGAAAGTGAGTCGTCCAAAAATCCAACCGGTCGACGATCCAAACGTGTCAAGAAAATTGATCCGATGAAAAACTCAATACAGACTCCTAACGAGTCTGTACTGAGTTCTTCATCGGATATAACTACGGAAGAAGACATAGCTTTTTGTCTCATGATGTTGTCTCGTCACAATAACAACAACAATTGGAAAACACAACAACAAAATCATCACCATCATTATCATCAATATCAAGAAGAGGAAGAACAATTCAACCAATATCTCGAAGAAGATGAAGAAGAAGACGAAGACGTCGAGGAAGAAGAAGAAAGTGAAGCTGAATCGGAGGAAGAAGAAGAAGAACTGAAACCGTTGAAGAAGGTACGAGGAAGATACAAATGTGACACGTGTAACAAAGTGTTTCGTTCATATCAAGCACTTGGTGGACATAGAGCGAGTCACAAGAAGAATATGAAATTAATTGCAGAAAATGGTGGTGATTCAATTTCAAATCACCATGATCACAAAAACAAAATTGAAAACAATGTTGTTGTTAATCATAACAACAATGGTGAAAAAAGAATTCATGAGTGTCCAATTTGTTTTAGAGAATTTTCCTCTGGTCAAGCACTTGGTGGACATAAGAGAACACATGGTATTGGAATTGGAATCGGAATTGGATCATCGGCACGGGCACTGGCACCGGCAGCAGCAGCAACAACAACGACAGCGACAACAGTTACAACAACAAATGTTCCAACAACAGCAACAATAAATGTTGAAGTTGTTCGAAGAAGTTCCGCGAATATCGGAGAAAGTTTAATAGATCTAAATCTTCCTGCTGATATGGATGAAGATGAGGATGGTGATGATGTTAGCCAAATTGAAGGCTCTGCTGTTTCCGATGCTGAAATTGTCAAACCTTAA 1188 0.4032 MEKHKCKLCFRSFSNGKALGGHMRSHMMNLPIPPKQNNSPPPPMIQLSFEAESGSSPSSSSFYGLRENPKRSFRFTDPNQIIDAGSIILQEDGGSESESSKNPTGRRSKRVKKIDPMKNSIQTPNESVLSSSSDITTEEDIAFCLMMLSRHNNNNNWKTQQQNHHHHYHQYQEEEEQFNQYLEEDEEEDEDVEEEEESEAESEEEEEELKPLKKVRGRYKCDTCNKVFRSYQALGGHRASHKKNMKLIAENGGDSISNHHDHKNKIENNVVVNHNNNGEKRIHECPICFREFSSGQALGGHKRTHGIGIGIGIGSSARALAPAAAATTTTATTVTTTNVPTTATINVEVVRRSSANIGESLIDLNLPADMDEDEDGDDVSQIEGSAVSDAEIVKP 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00839 395 SMART c2h2final6 219 241 IPR013087 -
Trre8g00839 395 SMART c2h2final6 4 26 IPR013087 -
Trre8g00839 395 SMART c2h2final6 283 305 IPR013087 -
Trre8g00839 395 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Trre8g00839 395 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 394 IPR044303 GO:0006355
Trre8g00839 395 MobiDBLite consensus disorder prediction 49 65 - -
Trre8g00839 395 ProSiteProfiles Zinc finger C2H2 type domain profile. 283 305 IPR013087 -
Trre8g00839 395 ProSiteProfiles Zinc finger C2H2 type domain profile. 219 246 IPR013087 -
Trre8g00839 395 Pfam C2H2-type zinc finger 218 243 - -
Trre8g00839 395 Pfam C2H2-type zinc finger 283 305 - -
Trre8g00839 395 Pfam C2H2-type zinc finger 4 27 - -
Trre8g00839 395 SUPERFAMILY beta-beta-alpha zinc fingers 218 305 IPR036236 -
Trre8g00839 395 MobiDBLite consensus disorder prediction 156 211 - -
Trre8g00839 395 ProSitePatterns Zinc finger C2H2 type domain signature. 285 305 IPR013087 -
Trre8g00839 395 SUPERFAMILY beta-beta-alpha zinc fingers 3 31 IPR036236 -
Trre8g00839 395 Coils Coil 168 208 - -
Trre8g00839 395 MobiDBLite consensus disorder prediction 118 133 - -
Trre8g00839 395 MobiDBLite consensus disorder prediction 177 206 - -
Trre8g00839 395 MobiDBLite consensus disorder prediction 366 395 - -
Trre8g00839 395 ProSitePatterns Zinc finger C2H2 type domain signature. 221 241 IPR013087 -
Trre8g00839 395 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Trre8g00839 395 MobiDBLite consensus disorder prediction 87 133 - -
Trre8g00839 395 Gene3D Classic Zinc Finger 216 305 - -
Trre8g00839 395 MobiDBLite consensus disorder prediction 366 380 - -
Trre8g00839 395 MobiDBLite consensus disorder prediction 30 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00839 Trre-Chr8 6021337 6022524 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00839 1 374 C2H2 Transcription Factor Family AT3G60580 38.718 1.09e-56 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre8g00839 zf-C2H2_6 6.7e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00839 - - psat:127105004 337.035