Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00814 ATGTCCTCTTCATCATCAACTTCCTTTTCACCGGACCAGCAACAACAGCAACAACTCTCTCCTTCCGACCAGCTCTGTTATGTTCATTGCAATTTTTGTGACACTGTTCTCGCGGTGAGTGTTCCTTGCTCAAGTTTGTTCAAGACTGTGACAGTGAGATGTGGTCATTGCACTAATCTTCTCTCAGTTAACATGCGTGCTTTGCTCCTTCCTGCATCTAATCAGCTTCACCTTGGACACAACTTCTTCAATCCTCAAAATTTTATGGAGGAGATTCGAAATGCGCCTTCGACAAATATGATGATGAACCAACTTCCAAATCCAAATGATTTGATGATGAGTGCCATGAGAGGAGGACATCATGAAGAAATCCCTAAACCTCCACCTGCAAACAGACCTCCGGAGAAGAGACAGAGAGTTCCATCTGCTTACAACCGCTTCATCAAGGATGAGATCCAACGTATCAAAGCTGGGAATCCTGATATAAGCCACAGAGAGGCTTTTAGTGCAGCTGCAAAGAATTGGGCCCACTTTCCACACATTCATTTCGGACTCATGCCTGATCATCAACCCGTGAAGAAAGCTAATGTTCGTCAGGACTCAGAGGACGTGCTTATGAAAGATGGGTTTTTCACACAAGCAAATGTAGGTGTCTCTCCCTACTAG 666 0.4459 MSSSSSTSFSPDQQQQQQLSPSDQLCYVHCNFCDTVLAVSVPCSSLFKTVTVRCGHCTNLLSVNMRALLLPASNQLHLGHNFFNPQNFMEEIRNAPSTNMMMNQLPNPNDLMMSAMRGGHHEEIPKPPPANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPDHQPVKKANVRQDSEDVLMKDGFFTQANVGVSPY 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00814 221 CDD HMG-box_SF 139 175 - -
Trre8g00814 221 FunFam Axial regulator YABBY 130 202 - -
Trre8g00814 221 Pfam YABBY protein 21 185 IPR006780 GO:0007275
Trre8g00814 221 SUPERFAMILY HMG-box 130 179 IPR036910 -
Trre8g00814 221 MobiDBLite consensus disorder prediction 119 133 - -
Trre8g00814 221 Gene3D High mobility group box domain 125 182 IPR036910 -
Trre8g00814 221 PANTHER PROTEIN YABBY 6-RELATED 1 197 IPR006780 GO:0007275
Trre8g00814 221 MobiDBLite consensus disorder prediction 119 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00814 Trre-Chr8 5784178 5787248 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00814 32 219 C2C2-YABBY Transcription Factor Family AT4G00180 63.158 2.81e-70 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Trre8g00814 YABBY 4e-74 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00814 K25796 - gmx:100781267 376.711