Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00809 ATGGCTTCATTTCCTTTAGTAACAACTCTTTTAATATTTCCCTTTCTTTTCTCCACTATTGTTTATGGTTACTCATTAAGTTCCATAAAATCATGGTGTAGCCAAACCCCTTATCCTCAACCATGTGAGTATTATTTAACTCACAATAATTTCAACCAAACCATAAAAAATAAATCCGATTTTTACAAAGTTTCACTTCAACTTGCAATACAAAGAGCACAAAAGGGCCAAGAAAACACACATGCAGTAGGCCCAAAGTGCCGTAACCCACAAGAAAAATCTGCATGGTCAGATTGTTGTGAACTCTATGATTTGACAATCCAAAAACTAACTCAAACAGTTGATCCAAAGTGCAAACATACCGATTCTCAAACTTGGCTTAGTACAGCTCTTACAAATCTTGAAACATGCAAAAATGGGTTTTATGACCTTGGTGTCACAAACTATGTCTTACCTTTGTTGTCCAATAATGTAACAAAGTTGTTAAGTAACACCTTGTCTCTAAACAAGGTTCCTTATCAAGAACCAAGTTATAAAGGTGGATTTCCTACATGGGTTAAACCCGGTGATAGGAAGCTTCTTCAAACATCTTCCGCGGCTTCTAAAGCTAACGTTGTGGTTGCTAAAGATGGTTCTGGCAAGTACACAAGTGTGAAGGCCGCGACCGATGCTGCACCAAGTGGTAGTGGAAGGTATGTCATATATGTGAAGGCCGGTGTGTATAATGAACAAGTTGAGATCAAAGCAAAGAATGTCATGTTGGTCGGAGATGGTATTGGCAAGACCATAATCACCGGTAGCCAAAGTGTTGGAGGTGGCACTACTACGTTCCGCTCAGCAACCGTTGCTGCTGTTGGTGATGGATTTATTGCTCAAGACATCACATTCAGAAACACAGCTGGAGCTGCAAATCATCAAGCTGTTGCATTCCGCTCAGGCTCAGATCTATCGGTTTTTTACAAATGTAGCTTCGAAGGTTATCAAGACACACTTTACGTTCATTCAGAAAGACAATTTTATAGAGAATGTAACATTTATGGCACAGTCGATTTCATCTTCGGTAATGCCGCCGTAGTTTTGCAAAGTTGCAACATTATTGCAAGAAACCCACCTCAAAAAACAATCACAGTTACCGCTCAAGGACGAACTGATCCAAACCAAAACACTGGAATTGTAATTCACAATTCTCAGATCACAGCTGCATCGGACTTAAACCCTAGTTCCGTAAAATCATACCTCGGCCGACCTTGGCAAAAATATTCAAGAACAGTTGTCATGAAAACTTCCATTGGTAGTTTTATTAACCCTGCTGGTTGGTTACCATGGGATGGTAATTTTGCTTTGGATACTTTGTATTATGCTGAATATGCTAATACTGGCTCAGGTGCATCCACTTCAAATAGGGTCACATGGAAAGGTTACCATGTTCTTACTAGTGCATCTCAAGCTACACCATTCACTGTTGGAAATTTCATTGCCGGTAATTCGTGGATACCAAACACAGGCGTACCTTTCACCGCTAGTCTTTAA 1530 0.3993 MASFPLVTTLLIFPFLFSTIVYGYSLSSIKSWCSQTPYPQPCEYYLTHNNFNQTIKNKSDFYKVSLQLAIQRAQKGQENTHAVGPKCRNPQEKSAWSDCCELYDLTIQKLTQTVDPKCKHTDSQTWLSTALTNLETCKNGFYDLGVTNYVLPLLSNNVTKLLSNTLSLNKVPYQEPSYKGGFPTWVKPGDRKLLQTSSAASKANVVVAKDGSGKYTSVKAATDAAPSGSGRYVIYVKAGVYNEQVEIKAKNVMLVGDGIGKTIITGSQSVGGGTTTFRSATVAAVGDGFIAQDITFRNTAGAANHQAVAFRSGSDLSVFYKCSFEGYQDTLYVHSERQFYRECNIYGTVDFIFGNAAVVLQSCNIIARNPPQKTITVTAQGRTDPNQNTGIVIHNSQITAASDLNPSSVKSYLGRPWQKYSRTVVMKTSIGSFINPAGWLPWDGNFALDTLYYAEYANTGSGASTSNRVTWKGYHVLTSASQATPFTVGNFIAGNSWIPNTGVPFTASL 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00809 509 ProSitePatterns Pectinesterase signature 1. 228 247 IPR018040 -
Trre8g00809 509 PANTHER PECTINESTERASE 18 499 - -
Trre8g00809 509 NCBIfam pectinesterase inhibitor domain 10 171 IPR006501 GO:0004857
Trre8g00809 509 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 28 171 IPR035513 -
Trre8g00809 509 SMART PMEI_2 24 168 IPR006501 GO:0004857
Trre8g00809 509 Gene3D - 198 509 IPR012334 -
Trre8g00809 509 FunFam Pectinesterase 198 509 - -
Trre8g00809 509 Pfam Pectinesterase 204 495 IPR000070 GO:0030599|GO:0042545
Trre8g00809 509 ProSitePatterns Pectinesterase signature 2. 345 354 IPR033131 -
Trre8g00809 509 Gene3D Invertase/pectin methylesterase inhibitor family protein 25 171 IPR035513 -
Trre8g00809 509 CDD PMEI-like_3 31 170 - -
Trre8g00809 509 Pfam Plant invertase/pectin methylesterase inhibitor 28 168 IPR006501 GO:0004857
Trre8g00809 509 SUPERFAMILY Pectin lyase-like 198 507 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00809 Trre-Chr8 5725408 5729041 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00809 1 509 Carbohydrate Esterase AT2G45220 66.148 0.0 708
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00809 K01051 - gmx:100794948 855.129