Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00805 ATGAATGAAGTTAAACTTTGGTGTAACAAAACCCCAAACCCTCAACCTTGTGAATATTTCTTAAACAATAACCCTACTTACCAACACAAACTCATAAAACAAAAATCTGATTTCTTTACACTTTCATTAGAACTTGTTCAACAAAGAGCACTCAAAGGCCATGCAAAAACTCTTTCATTAGGTTCAAAATGTAATAACCCACGTGAAAAATCTGCTTGGTCTGATTGTGTTGAACTATATGAACAAACCATTCTTAAACTCAACAAAACCCTAGACACTAAAACAAAGTGTTCTCAAGTTGATGCTCAAACATGGTTAAGCACTGCTCTCACAAACCTTGAAACATGTAAAGCTGGATTCTATGAACTTGGTGTTCAAGATTACATTCTTCCACTCATGTCAAATAATGTTACTAAGTTATTAAGTAACACTTTGGCTATTAACAAAGTTCAATATCAAGAACCAAGTTATAAAAATGGTTTTCCAACATGGGTTAAGCCAGGTGATAGAAAGCTATTGCAAAAAACTACTTCATCTTTTCGACCTAACGTAGTCGTGGCAAAAGATGGGTCAGGGAAGTATACAACAGTTAGTGCAGCTGTGAATGCTGCACCAAAGAATAACAATGGAAGGTATGTTATATATGTTAAAGCTGGTGTTTACAATGAACAAGTTGAGATCAAGGCAAAGAATATTATGTTGGTGGGAGATGGTATTGGAAAGACTATAATCACTGGTAGTAAAAGTGTTGGTGGAGGAACCACAACATTTCGTTCTGCCACAGTTGCTGCTGTTGGGGATGGATTTATTGCTCAAGATATCACATTTAGGAACACTGCCGGTGCAAATAACCATCAAGCAGTAGCCTTACGTTCTGGATCAGACTTATCTGTATTTTATAGATGCAGTTTTGAAGGTTATCAAGACACACTATATGTTCATTCAGATAGACAATTCTATAAAGAATGTAACATTTATGGTACAGTTGATTTCATATTTGGTAATGCTGCAGCAGTGTTCCAAAATTGTAACATATTTGCAAGAAACCCTCCAAACAAAGTTAACACAATCACTGCACAAGGTAGAACAGATCCAAACCAAAACACCGGCATTTCTATTCATAATTCTAGGGTTACAGCCGCTTCAGATTTGAAACTTGTTCAAAATTCTGTGAAAACTTATCTTGGAAGACCATGGAAACAATATTCTAGGACAGTTTTTATGAAAACTTATCTTGATAGTTTGATTCATCCATCAGGTTGGTTAGAATGGAGTGGTAATTTTGCATTAAGTACTTTATATTATGGAGAGTACATGAACACTGGTCTTGGTTCATCCACAAGAAACCGCGTTAAATGGCAAGGTTATCATGTGATAACTAGTGCTTCTGAAGCATCAAAATTCACGGTTTCAAGTTTGATTGCGGGGAATTCATGGTTGCCCGCAACTAAAGTTCCTTTTACATCTACTCTTTGA 1476 0.3591 MNEVKLWCNKTPNPQPCEYFLNNNPTYQHKLIKQKSDFFTLSLELVQQRALKGHAKTLSLGSKCNNPREKSAWSDCVELYEQTILKLNKTLDTKTKCSQVDAQTWLSTALTNLETCKAGFYELGVQDYILPLMSNNVTKLLSNTLAINKVQYQEPSYKNGFPTWVKPGDRKLLQKTTSSFRPNVVVAKDGSGKYTTVSAAVNAAPKNNNGRYVIYVKAGVYNEQVEIKAKNIMLVGDGIGKTIITGSKSVGGGTTTFRSATVAAVGDGFIAQDITFRNTAGANNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSDRQFYKECNIYGTVDFIFGNAAAVFQNCNIFARNPPNKVNTITAQGRTDPNQNTGISIHNSRVTAASDLKLVQNSVKTYLGRPWKQYSRTVFMKTYLDSLIHPSGWLEWSGNFALSTLYYGEYMNTGLGSSTRNRVKWQGYHVITSASEASKFTVSSLIAGNSWLPATKVPFTSTL 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00805 491 PANTHER PECTINESTERASE 4 483 - -
Trre8g00805 491 Gene3D - 177 491 IPR012334 -
Trre8g00805 491 SUPERFAMILY Pectin lyase-like 179 490 IPR011050 -
Trre8g00805 491 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 3 150 IPR035513 -
Trre8g00805 491 FunFam Pectinesterase 177 491 - -
Trre8g00805 491 Pfam Pectinesterase 183 477 IPR000070 GO:0030599|GO:0042545
Trre8g00805 491 ProSitePatterns Pectinesterase signature 1. 208 227 IPR018040 -
Trre8g00805 491 SMART PMEI_2 1 147 IPR006501 GO:0004857
Trre8g00805 491 NCBIfam pectinesterase inhibitor domain 2 149 IPR006501 GO:0004857
Trre8g00805 491 CDD PMEI-like_3 6 149 - -
Trre8g00805 491 Pfam Plant invertase/pectin methylesterase inhibitor 3 147 IPR006501 GO:0004857
Trre8g00805 491 SMART complete 216 394 IPR006633 -
Trre8g00805 491 Gene3D Invertase/pectin methylesterase inhibitor family protein 1 150 IPR035513 -
Trre8g00805 491 ProSitePatterns Pectinesterase signature 2. 325 334 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00805 Trre-Chr8 5695733 5697832 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00805 3 491 Carbohydrate Esterase AT2G45220 68.367 0.0 700
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00805 K01051 - gmx:100783428 859.366