Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00803 ATGAGTTATAATTCGTCCATCACTTTTGTTCTCCCTCGCACTAACAAACTCATCAACATGTTTTCTTGTCCGATTTGTTTGGAGATATATTTTGAGCCATGTACCACTCCTTGTGGTCACAGTTTTTGCAAAACGTGTTTACAATCTTCCATGTATGTGTCTGGCCGAAAGAAAAAATGCCCTTTATGCAGGGGATTCGTAAGTAATGGTTTATCCTGTTGTGTGAACATAGTTCTTTGGGATGCAGTACAGTCCTTGTTTCCTCACGAAGTAAAATCGCGGAAAGCAATTAATGCCTTAAACAGATCAAAAAATTTAAGTGCACAACCATATAAAAACTCTAGTTGTTCTTTGGATGAGGTTTTAGGTTATGCAAACAATGTGATGCTAGGCATTATTGCTCTTTTAGTGCCTTGCGCGGCATATGTTGCACTAGTTTATGGATAA 447 0.3803 MSYNSSITFVLPRTNKLINMFSCPICLEIYFEPCTTPCGHSFCKTCLQSSMYVSGRKKKCPLCRGFVSNGLSCCVNIVLWDAVQSLFPHEVKSRKAINALNRSKNLSAQPYKNSSCSLDEVLGYANNVMLGIIALLVPCAAYVALVYG 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00803 148 ProSiteProfiles Zinc finger RING-type profile. 23 64 IPR001841 -
Trre8g00803 148 PANTHER UNCHARACTERIZED 14 109 - -
Trre8g00803 148 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 115 IPR013083 -
Trre8g00803 148 SMART ring_2 23 63 IPR001841 -
Trre8g00803 148 ProSitePatterns Zinc finger RING-type signature. 38 47 IPR017907 -
Trre8g00803 148 Pfam Zinc finger, C3HC4 type (RING finger) 23 63 IPR018957 GO:0046872
Trre8g00803 148 SUPERFAMILY RING/U-box 7 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00803 Trre-Chr8 5686539 5687595 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00803 6 67 C3H Transcription Factor Family AT1G74990 35.484 2.23e-08 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00803 - - tpra:123898852 175.637