Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00797 ATGATAGCAATTCGTTTGCTTGTAACACTTTTGGTTCCATTTCTACTTACATCATTAGTTTCTTCTTATTCCATGAATGAAATTAAACTTTGGTGTAACAAAACCCCTAACCCTCAACCTTGTGAATATTTCTTAAACAATAACCCTACTTACCAACACAAACTCATAAAACAAAAATCTGATTTCTTTACACTTTCATTAGAACTTGCTCAACAAAGAGCACTCAAAGGCCATGCAAAAACTCTTTCATTAGGTTCAAAATGTAATAACCCACGTGAAAAATCTGCTTGGTCTGATTGTGTTGAACTATATGAACAAACCATTCTTAAACTCAACAAAACCCTAAACACTAAAACAAAGTGTTCTCAAGTTGATGCTCAAACATGGTTAAGCACTGCTCTCACAAACCTTGAGACATGTAAAGCTGGATTCTATGAACTTGGTGTTCAAGATTACATTCTTCCACTCATGTCAAATAATGTTACTAAGTTATTAAGTAACACTTTGGCTATTAACAAAGTTCAATATCAAGAACCAAGTTATGAAAATGGTTTTCCAACATGGGTTAAGCCAGGTGATAGAAAGCTATTGCAAAAAACTTCTTCATCATCTTTTCGACCTAACGTAGTCGTAGCAAAAGATGGATCAGGAAAGTATACAACAGTTAGTGCAGCTGTGAATGCTGCACCAAAGAATAATAAAGGAAGGTATGTTATATATGTGAAAGCTGGTGTTTACAATGAACAAGTTGAGATAAAGGCAAAGAATATTATGTTGGTGGGAGATGGTATTGGAAAGACTATAATCACTGGTAGTAAAAGTGTTGGTGGAGGAACCACAACCTTCCGTTCTGCCACAGTTGCTGCTGTAGGGGATGGATTTATTGCTCAAGATATCACATTTAGGAACATTGCCGGTGCAAATAACCATCAAGCTGTAGCCTTACGTTCTGGATCAGACTTATCTGTATTTTATAGATGCAGTTTTGAAGGTTATCAAGACACACTATATGTTCATTCAGATAGACAATTCTACAAAGAATGTAACATTTATGGTACAGTTGATTTCATATTTGGTAATGCTGCAGCAGTTTTCCAAAATTGTAACATATTTGCAAGAAACCCTCCAAACAAAGTTAACACAATCACTGCACAAGGTAGAACAGATCCAAACCAAAACACTGGCATTTCTATTCATAATTCTAGGGTTACAGCCGCTTCGGATTTGAAACGTGTCCAAAATTCGGTTAAAACTTATCTTGGAAGACCATGGAAACAATATTCTAGGACAGTTTTTATGAAAACTTCTCTTGATAGTTTGATTCATCCAGCAGGTTGGTTAGAATGGAGTGGTAATTTTGCATTAAGTACTTTATATTATGGAGAGTACATGAACACTGGTCTCGGTTCTTCCACAAGAAACCGCGTTAAATGGCAAGGTTATCATGTGATAACTAGTGCTTCTGAAGCATCAAAATTCACTGTTTCAAGTTTGATTGCGGGGAACTCATGGTTGCCCGCAACTAAAGTTCCTTTTACGTCTACTCTTTGA 1551 0.3598 MIAIRLLVTLLVPFLLTSLVSSYSMNEIKLWCNKTPNPQPCEYFLNNNPTYQHKLIKQKSDFFTLSLELAQQRALKGHAKTLSLGSKCNNPREKSAWSDCVELYEQTILKLNKTLNTKTKCSQVDAQTWLSTALTNLETCKAGFYELGVQDYILPLMSNNVTKLLSNTLAINKVQYQEPSYENGFPTWVKPGDRKLLQKTSSSSFRPNVVVAKDGSGKYTTVSAAVNAAPKNNKGRYVIYVKAGVYNEQVEIKAKNIMLVGDGIGKTIITGSKSVGGGTTTFRSATVAAVGDGFIAQDITFRNIAGANNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSDRQFYKECNIYGTVDFIFGNAAAVFQNCNIFARNPPNKVNTITAQGRTDPNQNTGISIHNSRVTAASDLKRVQNSVKTYLGRPWKQYSRTVFMKTSLDSLIHPAGWLEWSGNFALSTLYYGEYMNTGLGSSTRNRVKWQGYHVITSASEASKFTVSSLIAGNSWLPATKVPFTSTL 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00797 516 ProSitePatterns Pectinesterase signature 1. 233 252 IPR018040 -
Trre8g00797 516 NCBIfam pectinesterase inhibitor domain 7 173 IPR006501 GO:0004857
Trre8g00797 516 SUPERFAMILY Pectin lyase-like 204 515 IPR011050 -
Trre8g00797 516 Pfam Plant invertase/pectin methylesterase inhibitor 27 171 IPR006501 GO:0004857
Trre8g00797 516 FunFam Pectinesterase 202 516 - -
Trre8g00797 516 Gene3D - 202 516 IPR012334 -
Trre8g00797 516 Pfam Pectinesterase 208 502 IPR000070 GO:0030599|GO:0042545
Trre8g00797 516 ProSitePatterns Pectinesterase signature 2. 350 359 IPR033131 -
Trre8g00797 516 CDD PMEI-like_3 30 173 - -
Trre8g00797 516 SMART complete 241 419 IPR006633 -
Trre8g00797 516 Gene3D Invertase/pectin methylesterase inhibitor family protein 22 174 IPR035513 -
Trre8g00797 516 PANTHER PECTINESTERASE 12 508 - -
Trre8g00797 516 SMART PMEI_2 23 171 IPR006501 GO:0004857
Trre8g00797 516 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 27 174 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00797 Trre-Chr8 5658141 5660221 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00797 1 516 Carbohydrate Esterase AT2G45220 65.511 0.0 706
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00797 K01051 - gmx:100783428 875.93