Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00795 ATGAGAACTTATGCCACCGTTTTGTTCTTCTTCTTTGCCATGTCCATAACCACATCCTTTTGCCTCCAAGAAATGGAGGTACTTCAAATGGCTCAAAAACAAGTTTCACAAGCCATGAATTGGGTTGATAACTCTATGAAATTGCATGGTTTAGAAAGCACTAGTATTTCATCATTAAACCAAAAAAGTGTTTTAGCTCTTAGAGATTGTGCTAAACTCTATGAGGAGAGTGAGTCTAGGCTTAATCAAATGATGTTTGAAAAGAGTGGTTACACTAAAGAAGATGCACTTATATGGATAAGTGCATTGATGACAAACCATAGGACTTGTTTGGATGGATTAAATGAAAAAGGATATTTTCAAGGTGATCAAATTTTGGGTAGAAACTTGACAAGGTTGCTTGCCCAAACACTTGCTTTTTATTCAAACAACAAAGTAAAAGGAAAAGCAAGCAATAAAGCAGATTTCACAGTTGCACAAGATGGTTCAGGAACTCACAAAACAATCAAAGAAGCAGTGGATGCACTTGCTTCAATGGGACATAATCGTCCTTCAAGAGCAATTATACATGTAAAAGCAGGAGTCTACCATGAAAAAGTTGAGATTGCAAGCAAGTTGCATAATGTTATGTTTGTTGGAGATGGCATTGACAAAACTATTGTCACTGGTAATAGGAATGTTGTTCATGGTTCTACCACTCTTAACTCTGCCACATTTGATGTATCAGGGGATGGATTTTGGGCAAGAGACATGACATTTGAGAACACAGCAGGACCAGAAAATCACCAAGCAGTAGCACTAAAAGTAAGTTCAGACTTATCAGTCTTCTATAGATGCAGCTTCAAAGCCCACCAAGACACACTTTACGTCCACTCGAATCGACAATTCTACCGCGACTGCCACATATATGGAACAATTGATTTCATATTCGGTGACGCAGCCGTAGTCTTACAAAACTGCGACATTTTCATTCGAAAACCAATGAGTCACCAATCAAATTTCATCACGGCACAAGGTCGAGACGATCCAAACAAACCAACCGGAATTTCGATACAAAATTGTAGGGTTAGGCCTGATTCAGAATTTTCTATGGTAAAAGATAATTTCAAGTGTTTTTTAGGTAGGCCTTGGAAAAAATATTCAAGAACTGTTTTTATAAAAAGTGATTTAGATGGTTTGATTCATCCTAAAGGTTGGGGTGAATGGGAGGGTAATTTTGCACTTTCAACTTTATATTATGGTGAATATATGAATTATGGAAATGGTGCATCTACACAAAATAGGGTTAATTGGCCTGGTTTTCATGTTTTGAATAGTGCTGATGAGGCTTCACAATTTACAGTTAGTAGATTTTTGAAAGGTGGGTATTGGATTTCAGCTTCAGGGGTGCCATTTTGGGCAGGAATTTAA 1410 0.3738 MRTYATVLFFFFAMSITTSFCLQEMEVLQMAQKQVSQAMNWVDNSMKLHGLESTSISSLNQKSVLALRDCAKLYEESESRLNQMMFEKSGYTKEDALIWISALMTNHRTCLDGLNEKGYFQGDQILGRNLTRLLAQTLAFYSNNKVKGKASNKADFTVAQDGSGTHKTIKEAVDALASMGHNRPSRAIIHVKAGVYHEKVEIASKLHNVMFVGDGIDKTIVTGNRNVVHGSTTLNSATFDVSGDGFWARDMTFENTAGPENHQAVALKVSSDLSVFYRCSFKAHQDTLYVHSNRQFYRDCHIYGTIDFIFGDAAVVLQNCDIFIRKPMSHQSNFITAQGRDDPNKPTGISIQNCRVRPDSEFSMVKDNFKCFLGRPWKKYSRTVFIKSDLDGLIHPKGWGEWEGNFALSTLYYGEYMNYGNGASTQNRVNWPGFHVLNSADEASQFTVSRFLKGGYWISASGVPFWAGI 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00795 469 Pfam Pectinesterase 155 454 IPR000070 GO:0030599|GO:0042545
Trre8g00795 469 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 28 120 IPR035513 -
Trre8g00795 469 FunFam Pectinesterase 149 469 - -
Trre8g00795 469 PANTHER PECTINESTERASE 26 459 - -
Trre8g00795 469 Gene3D Invertase/pectin methylesterase inhibitor family protein 25 143 IPR035513 -
Trre8g00795 469 Gene3D - 149 469 IPR012334 -
Trre8g00795 469 ProSitePatterns Pectinesterase signature 2. 302 311 IPR033131 -
Trre8g00795 469 SMART PMEI_2 12 140 IPR006501 GO:0004857
Trre8g00795 469 Pfam Plant invertase/pectin methylesterase inhibitor 29 123 IPR006501 GO:0004857
Trre8g00795 469 SUPERFAMILY Pectin lyase-like 153 468 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00795 Trre-Chr8 5644086 5650884 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00795 6 469 Carbohydrate Esterase AT3G60730 52.335 0.0 537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00795 K01051 - gmx:100792852 723.005