Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00794 ATGAGAACTTATGCCACCGTTTTGTTCTTCTTCTTTGCCATGTCCATAACCACATCCTTTTGCCTCCAAGAAATGGAGGTACTTCAAATGGCTCAAAAACAAGTTTCACAAGCCATGAATTGGGTTGATAACTCTATGAAATTGCATGGTTTAGAAAGCACTAGTATTTCATCATTAAACCAAAAAAGTGTTTTAGCTCTTAGAGATTGTGCTAAACTCTATGAGGAGAGTGAGTCTAGGCTTAATCAAATGATGTTTGAAAAGAGTGGTTACACTAAAGAAGATGCACTTATATGGATAAGTGCATTGATGACAAACCATAGGACTTGTTTGGATGGATTAAATGAAAAAGGATATTTTCAAGGTGATCAAATTTTGGGTAGAAACTTGACAAGGTTGCTTGCCCAAACACTTGCTTTTTATTCAAACAACAAAGTAAAAGGAAAAGATTTCACAGTTGCACAAGATGGTTCAGGAACTCACAAAACAATCAAAGAAGCAGTGGATGCACTTGCTTCAATGGGACATAATCGTCCTTCAAGAGCAATTATACATGTAAAAGCAGGAGTCTACCATGAAAAAGTTGAGATTGCAAGCAAGTTGCATAATGTTATGTTTGTTGGAGATGGCATTGACAAAACTATTGTCACTGGTAATAGGAATGTTGTTCATGGTTCTACCACTCTTAACTCTGCCACATTTGATGTATCAGGGGATGGATTTTGGGCAAGAGACATGACATTTGAGAACACAGCAGGACCAGAAAATCACCAAGCAGTAGCACTAAAAGTAAGTTCAGACTTATCAGTCTTCTATAGATGCAGCTTCAAAGCCCACCAAGACACACTTTACGTCCACTCGAATCGACAATTCTACCGCGACTGCCACATATATGGAACAATTGATTTCATATTCGGTGACGCAGCCGTAGTCTTACAAAACTGCGACATTTTCATTCGAAAACCAATGAGTCACCAATCAAATTTCATCACGGCACAAGGTCGAGACGATCCAAACAAACCAACCGGAATTTCGATACAAAATTGTAGGGTTAGGCCTGATTCAGAATTTTCTATGGTAAAAGATAATTTCAAGTGTTTTTTAGGTAGGCCTTGGAAAAAATATTCAAGAACTGTTTTTATAAAAAGTGATTTAGATGGTTTGATTCATCCTAAAGGTTGGGGTGAATGGGAGGGTAATTTTGCACTTTCAACTTTATATTATGGTGAATATATGAATTATGGAAATGGTGCATCTACACAAAATAGGGTTAATTGGCCTGGTTTTCATGTTTTGAATAGTGCTGATGAGGCTTCACAATTTACAGTTAGTAGATTTTTGAAAGGTGGGTATTGGATTTCAGCTTCAGGGGTGCCATTTTGGGCAGGAATTTAA 1395 0.3735 MRTYATVLFFFFAMSITTSFCLQEMEVLQMAQKQVSQAMNWVDNSMKLHGLESTSISSLNQKSVLALRDCAKLYEESESRLNQMMFEKSGYTKEDALIWISALMTNHRTCLDGLNEKGYFQGDQILGRNLTRLLAQTLAFYSNNKVKGKDFTVAQDGSGTHKTIKEAVDALASMGHNRPSRAIIHVKAGVYHEKVEIASKLHNVMFVGDGIDKTIVTGNRNVVHGSTTLNSATFDVSGDGFWARDMTFENTAGPENHQAVALKVSSDLSVFYRCSFKAHQDTLYVHSNRQFYRDCHIYGTIDFIFGDAAVVLQNCDIFIRKPMSHQSNFITAQGRDDPNKPTGISIQNCRVRPDSEFSMVKDNFKCFLGRPWKKYSRTVFIKSDLDGLIHPKGWGEWEGNFALSTLYYGEYMNYGNGASTQNRVNWPGFHVLNSADEASQFTVSRFLKGGYWISASGVPFWAGI 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00794 464 Gene3D - 145 464 IPR012334 -
Trre8g00794 464 Gene3D Invertase/pectin methylesterase inhibitor family protein 25 143 IPR035513 -
Trre8g00794 464 PANTHER PECTINESTERASE 26 454 - -
Trre8g00794 464 Pfam Pectinesterase 150 449 IPR000070 GO:0030599|GO:0042545
Trre8g00794 464 FunFam Pectinesterase 144 464 - -
Trre8g00794 464 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 28 120 IPR035513 -
Trre8g00794 464 Pfam Plant invertase/pectin methylesterase inhibitor 29 122 IPR006501 GO:0004857
Trre8g00794 464 SMART PMEI_2 12 140 IPR006501 GO:0004857
Trre8g00794 464 SUPERFAMILY Pectin lyase-like 148 463 IPR011050 -
Trre8g00794 464 ProSitePatterns Pectinesterase signature 2. 297 306 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00794 Trre-Chr8 5644086 5650884 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00794 6 464 Carbohydrate Esterase AT3G60730 51.167 0.0 518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00794 K01051 - gmx:100792852 718.383