Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00784 ATGAATCTTGATAAACTACGTGAATGGGCGTCTGATCATAACACGATCAGAAAGACATGCAACCATTCATCATCCAATGTTGATTCTTCGTCATCATCTACTAATCATTTTGCTGATAATGCTCCTGCAATTAGGATTCTTAAATCCCAGTTTGGTCTCCCGCATGTGTCACTGTTATCATCAATTGATGAAGTCAAAAACAAAAGCAATGCTTTTGCTGCTTCTGATCATCTGGATCTCCCTGGAGGCTCATCATCACACTCAGATGAGCCTCCAGCTCAGATGATCAACGTTGTTGCTACAGATGGTGATGAGTTTGGTGACGGTAACAACAACAGGAAGAAGAACAAGAAAAGTGCTAACAATGGAACAATCAGCAGCCTTGCATGCCCAAAATACGGACCGTATACATGTCCCATTGAATTTTGCGACATGGTATTTACAACATCCCAAACATTTGCTAACCACATGAAGTGGAATCACCACAAGAACGGAAAAAAACAGAATTGA 510 0.4078 MNLDKLREWASDHNTIRKTCNHSSSNVDSSSSSTNHFADNAPAIRILKSQFGLPHVSLLSSIDEVKNKSNAFAASDHLDLPGGSSSHSDEPPAQMINVVATDGDEFGDGNNNRKKNKKSANNGTISSLACPKYGPYTCPIEFCDMVFTTSQTFANHMKWNHHKNGKKQN 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00784 169 ProSiteProfiles Zinc finger C2H2 type domain profile. 136 167 IPR013087 -
Trre8g00784 169 ProSitePatterns Zinc finger C2H2 type domain signature. 138 162 IPR013087 -
Trre8g00784 169 SMART c2h2final6 136 161 IPR013087 -
Trre8g00784 169 MobiDBLite consensus disorder prediction 102 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00784 Trre-Chr8 5590030 5590539 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00784 121 164 C2H2 Transcription Factor Family AT2G15740 56.818 3.68e-07 47.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre8g00784 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00784 - - tpra:123922079 143.665