Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00781 ATGACGAGGAAGAAGTTGAAACTTGCCTTTTTGTCAGATGATAAAGCAAGGAAGGCAACTTATAAGAAAAGAATGAAGAGTGTCATCAAGAAGGTGAGCGAACTCTCAATTCTTTGCAACATTCCAGCCTGTGCTATAATTTCAAATCCTTTTAATTCTAAAACAGAGGTGTGGCCAAATCTAGAGGGAGCCAAACAGGTGATTAAGATGTATCAGAATTCATCTATGATAGATGAAGCAAAAAATGTGAGTCAAGAGAGCTTCCTCTTGGAAGAGATTACTAAAGCCAGAGAGAAACTTGAAAAGAAAAGGCAAGAGATTCGTGAGAAGGAGCTCACTGTTCGTATGCTTGAGTACATGAAAAACAAAAATTTGCCTAATGATCTATCTGTTACAGATTTGAAAGAGTTTGATAAGCTAACTGAGAAGCATCTCAAAGATATTGATAACAAGATTGTTGAGCTGAATGGATCTAATTAG 480 0.3646 MTRKKLKLAFLSDDKARKATYKKRMKSVIKKVSELSILCNIPACAIISNPFNSKTEVWPNLEGAKQVIKMYQNSSMIDEAKNVSQESFLLEEITKAREKLEKKRQEIREKELTVRMLEYMKNKNLPNDLSVTDLKEFDKLTEKHLKDIDNKIVELNGSN 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00781 159 PANTHER MADS BOX PROTEIN 3 152 - -
Trre8g00781 159 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 50 IPR002100 GO:0003677|GO:0046983
Trre8g00781 159 ProSiteProfiles MADS-box domain profile. 1 47 IPR002100 GO:0003677|GO:0046983
Trre8g00781 159 SUPERFAMILY SRF-like 1 82 IPR036879 GO:0003677|GO:0046983
Trre8g00781 159 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre8g00781 159 Coils Coil 86 113 - -
Trre8g00781 159 CDD MADS_SRF_like 2 59 IPR033897 GO:0000981|GO:0000987|GO:0045944
Trre8g00781 159 Gene3D - 13 125 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00781 Trre-Chr8 5583278 5583757 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00781 1 152 Type I MADS-box Gene Family AT5G48670 42.484 1.15e-32 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre8g00781 SRF-TF 5.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00781 - - gmx:100792290 190.274