Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00780 ATGACTAGGAAGAAGGTGAATCTTGCCTTTATCTCTAATGTTAGAGCAAGGAAGGAATCCTACCGAAAGAGGAAGAAGAGTATCATAAAAAAGATGAGTGAAATTAAGATTCTTTGCGATATTCCAGCATGTGCTATAATTTCAAATCCTTTTAATTCTAAGACAGTGGTGTGGCCGGATCTAGAGGGAGCCAAGCAGGTGATTGAGAGGTATCAAAATTCATCTGAGATAGATGAGACAAGAAATGTGAACCAAAAGAGCTTCCTCTTGCAGAATATTACTAAAGCCAAGGAGAAACTTGAAAAGCTAAAGCAAGAGATTCATGAGAAAGAGCTGACCATTCATATGATGGGGTACATGCAAAATAAAAAATTGCCTGACGATCTATCTGCTTTGGATTTGAAAGGTTTTGATAAGCAAATCGAGAAAAATCTGAAAGGGATTGATAACAAGATTGCTGAGCTCAAATTATCCAATTAA 480 0.3667 MTRKKVNLAFISNVRARKESYRKRKKSIIKKMSEIKILCDIPACAIISNPFNSKTVVWPDLEGAKQVIERYQNSSEIDETRNVNQKSFLLQNITKAKEKLEKLKQEIHEKELTIHMMGYMQNKKLPDDLSALDLKGFDKQIEKNLKGIDNKIAELKLSN 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00780 159 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Trre8g00780 159 Coils Coil 86 113 - -
Trre8g00780 159 ProSiteProfiles MADS-box domain profile. 1 47 IPR002100 GO:0003677|GO:0046983
Trre8g00780 159 Gene3D - 14 109 IPR036879 GO:0003677|GO:0046983
Trre8g00780 159 PANTHER MADS BOX PROTEIN 3 152 - -
Trre8g00780 159 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre8g00780 159 SUPERFAMILY SRF-like 2 86 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00780 Trre-Chr8 5581428 5581907 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00780 3 152 Type I MADS-box Gene Family AT1G65300 35.099 4.46e-28 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre8g00780 SRF-TF 8.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00780 - - gmx:100792290 153.68