Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00731 ATGGGTAGCACTGAGACAAAGATGTACGATGTGTTCTTGAGTTTCAGAGGGGAAGACAGTCGTGCGAAATTCATTTCACATCTCGAGTCCTCTCTTCAAAATGCTGGGATTGATGTGTTCAAAGACGACGATGGGATTCAACGGGGAGATAAGATCTCAGCCTCATTGTTGCAAGCGATCGGTCAGTCTAGAATTTCTATTGTTGTTTTGTCTAGAAATTTTGCTAATTCAAAATGGTGTATGCTGGAGTTGGAGAGAATTGTGGAAATCAGCAGAACCAATGGTATGGTGGTTGTACCAGTGTTTTATGAGGTAGACCCCTCAGAAGTACGTCATCAGACAGGAGAGTTTGGAAAAGCTTTTGAATATCTTGTATCATCAATATCAGTGGATGAATACACAAAGAGGAATTGGAAAACAGCACTCCATGAAGTTGGTGGTAGAGCAGGGGTAGTCATCATAAATTCCAGGAATGAAAATGAGGATATCAAGAAAATAGTCGAATTTGTTACTCATTTGTTAGACAAGACAGAATTATTTGTTGCCGACCATCCAGTAGGAGTAGAATCACGGGTACAAGATGTTATTCAACTACTGAACAGTCAAAAATCAAAAGGTCCTCTACTACTAGGGATATGGGGCATGGGAGGGATCGGAAAAACAACCATTGCTAAAGCCATTTATAATGAAATTCGTCATGATTTTGAGGCAAAGAGTTTCCTATTGAATGTCAGGGAAGTATGGAAACTAGATAGTGACAAAGTTTCTTTGCAGCAACGACTTCTTTCTGACATCAACAAAACTACAAAGATAAAGATAGATACAGTTGAATCAGGAAAAATTATATTACAGGAAAGACTTCGTGAGAAAAGGATACTTCTTGTAATTGATGATGTGAATAAATTGGATCAATTGAATGCTTTGTGTGGAAATCGAAAATGGTTTGGTGAGGGAAGTAGAATAATCATCACAACAAGAGATGATGATTTACTTAGTAGACTTGAAGTTGACCATGTATACAGAGTGAAGGAAATGAATGACAGTGAATCTCTCGAGCTTTTTAATTGGCATGCATTTAAGCAACCAATTCCTAGAGAAGGTTTCACTCACCTTGCTAGAGAGGTTGTCAAGTACTCTGGAGGACTGCCGCTAGCTCTTCAAGTCATTGGATCCTTTTTGTTGACTAGGAGAAGGGAAGCAGAGTGGAATAGTATATTGGAGAAACTCAAACTGATTCCTAATGATGAAGTGTCAGAGAAGCTCAGAATAAGTTTTGATGGTTTAAGTGATGATGATATGAAAGATATATTCCTTGATATTGCTTTTTTCTTTATTGGTATGGACCGGGAAGACGTAACCAATATATTAAAAGACTGTGGGCATTTTCCAGAAATTGGAATAAGTATTCTCGTACAACAAAGCCTTGTAACTGTTGATAGAAAAAACAAGATTGGAATGCATGATTTGCTACGAGACATGGGAAGAGAGATTGTCCGCAAGCAATCTAAAGAGAGGTGCAAGGAGCCTACTAGATTATGGCGTTATGAGGATGTACATGAGTTGTCAAAAGATACTAGTACTTTTGATGTCAAAGGATTGACTTTAAAGATGTCAAGAATGGACTCGCCAACTTATTTGGAAACCAAAGCATTTGAGAAGATGGACAAGCTTAGATTGCTTCAACTTTCTGGTGTACAACTTGATGGAGATTACAAATATCTTTCAAGACATCTTAGGTGGCTAAGTTGGCATCGCTTCCCTTTAAAATTTACACCTGCAGACTTTCATCAACGAAGTTTAGTTGCTGTTGACTTAAAATATTCCAATCTGGAACAAGTGTGGAGAAAGTCTCAGTTGCTGGTAAAGCTGAAAATTCTTAATCTTAGTCATTCCCACAACTTGAGACATACCCCAGACTTTTCGAACTTGCCAAATCTTGAAAAGTTAATATTGAAAGATTGTCCAAGTCTGTCTTCGGTTTCATCTAATATAGGACAACTTAAAAAAATTCTGTTAATAAATTTGAAAGATTGTACAGGCCTTCGTGAACTTCCAAGGAGCATCTATAAGTTAGACTCAGTCAAAACTCTCATTTTGTCTGGATGTACAAAAATTGACAAGTTGGAAGAGGATATAGAACAAATGAAATCTTTAACCACCCTGGTTGCAGATAACACTGCTATAGCAAGAGTTCCCTTTGCAGTAGTAAGATCAAAAAGCATCGCATATATTTCCCTCTGTGGCTATGAAGGATTTGGGCGTAAAGTGTTTCCTTCTATTATCCAGTCTTGGTTGTCGCCAACAAATAGTATCCTATCCTTGGTTCAAACATTTGCAGGAACTTCGTGTCTTGATATCACAGATGAACAAAATAACAATTTCTATTGTCTATCCTCTATTTTTGAAGACCTTCAGGATCTTCAACGTCTTTGGTTGAAATGCGATTCAGAAGCTCAATTAAATCAAACTGTGGCAAGTATTTTGTATAGCTTTAACACTCAAAATTGTGAGGGATTCTCAAATATCGGGACTTCAGCATCAATTCGTTGTCACAGTCAAGTTTGCATTTCAAGCTCAAAAAAATCATTAACATCCCTTTTGATTCAAATGGGAATGAGCTGCGATATCACCAACATTCTTAGAGAAAATATTTTGCAGAAAATGCCTCCCACTGGGTCTGGTTTGCTCCCTGGTGACAACTATCCCGATTGGCTAACCTTCAATAGCAACAGTTCTTCTGTAACTTTTGAAGTACCTCAAGTGGATGGGCGTTCTTTGAAGACAATCATGTGCATTGCCTATACTTCTTCCCCAAACAATACAATAACTGAAGGTTTTGAAGTTTTGTTGGTAATAAATTGCACAAAGAACACCATTCAGGTCTACAAGAGAGATGCATTACTAGCCTCCTTTGATGAGGAGGAGTGGCAGAGAGTAATATCAAATATAGAACCTGGCAACAAAATTAAGGTGGTGGTTGTTTTTACAAATGAATTCATTGTGAAGAAAACAACAATTTATCTTGTATATGATGAACCAATTGAGGTAAAGATGAATCATTGCCATGAGCCAGATGAAAATATATTTGGTAGAGTCTTCTTTGCTATTCCTTCCTTTGCTCGGGCTGTTCTGACATCACGGCCTATCTGGTTCTGTTTGGCTGGTATTATGGTTTGGTCATCTAGCCGTCGTTCTGAAAAACGAAGAAGAGACAACCCCAGCTAA 3225 0.3789 MGSTETKMYDVFLSFRGEDSRAKFISHLESSLQNAGIDVFKDDDGIQRGDKISASLLQAIGQSRISIVVLSRNFANSKWCMLELERIVEISRTNGMVVVPVFYEVDPSEVRHQTGEFGKAFEYLVSSISVDEYTKRNWKTALHEVGGRAGVVIINSRNENEDIKKIVEFVTHLLDKTELFVADHPVGVESRVQDVIQLLNSQKSKGPLLLGIWGMGGIGKTTIAKAIYNEIRHDFEAKSFLLNVREVWKLDSDKVSLQQRLLSDINKTTKIKIDTVESGKIILQERLREKRILLVIDDVNKLDQLNALCGNRKWFGEGSRIIITTRDDDLLSRLEVDHVYRVKEMNDSESLELFNWHAFKQPIPREGFTHLAREVVKYSGGLPLALQVIGSFLLTRRREAEWNSILEKLKLIPNDEVSEKLRISFDGLSDDDMKDIFLDIAFFFIGMDREDVTNILKDCGHFPEIGISILVQQSLVTVDRKNKIGMHDLLRDMGREIVRKQSKERCKEPTRLWRYEDVHELSKDTSTFDVKGLTLKMSRMDSPTYLETKAFEKMDKLRLLQLSGVQLDGDYKYLSRHLRWLSWHRFPLKFTPADFHQRSLVAVDLKYSNLEQVWRKSQLLVKLKILNLSHSHNLRHTPDFSNLPNLEKLILKDCPSLSSVSSNIGQLKKILLINLKDCTGLRELPRSIYKLDSVKTLILSGCTKIDKLEEDIEQMKSLTTLVADNTAIARVPFAVVRSKSIAYISLCGYEGFGRKVFPSIIQSWLSPTNSILSLVQTFAGTSCLDITDEQNNNFYCLSSIFEDLQDLQRLWLKCDSEAQLNQTVASILYSFNTQNCEGFSNIGTSASIRCHSQVCISSSKKSLTSLLIQMGMSCDITNILRENILQKMPPTGSGLLPGDNYPDWLTFNSNSSSVTFEVPQVDGRSLKTIMCIAYTSSPNNTITEGFEVLLVINCTKNTIQVYKRDALLASFDEEEWQRVISNIEPGNKIKVVVVFTNEFIVKKTTIYLVYDEPIEVKMNHCHEPDENIFGRVFFAIPSFARAVLTSRPIWFCLAGIMVWSSSRRSEKRRRDNPS 1074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00731 1074 PRINTS Disease resistance protein signature 209 224 - -
Trre8g00731 1074 PRINTS Disease resistance protein signature 618 634 - -
Trre8g00731 1074 PRINTS Disease resistance protein signature 286 300 - -
Trre8g00731 1074 PRINTS Disease resistance protein signature 379 393 - -
Trre8g00731 1074 Pfam TIR domain 9 170 IPR000157 GO:0007165
Trre8g00731 1074 SMART AAA_5 206 349 IPR003593 GO:0016887
Trre8g00731 1074 Pfam NB-ARC domain 189 410 IPR002182 GO:0043531
Trre8g00731 1074 ProSiteProfiles TIR domain profile. 7 174 IPR000157 GO:0007165
Trre8g00731 1074 SUPERFAMILY L domain-like 486 815 - -
Trre8g00731 1074 Gene3D - 2 145 IPR035897 -
Trre8g00731 1074 Gene3D Ribonuclease Inhibitor 515 835 IPR032675 -
Trre8g00731 1074 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 9 839 IPR044974 GO:0006952
Trre8g00731 1074 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 170 440 IPR027417 -
Trre8g00731 1074 Gene3D - 153 339 IPR027417 -
Trre8g00731 1074 Gene3D - 344 429 IPR042197 -
Trre8g00731 1074 SMART till_3 8 148 IPR000157 GO:0007165
Trre8g00731 1074 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 150 IPR035897 -
Trre8g00731 1074 FunFam Disease resistance protein (TIR-NBS-LRR class) 5 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00731 Trre-Chr8 5268019 5273914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00731 4 735 WRKY Transcription Factor Family AT4G12020 30.739 1.32e-82 293