Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00711 ATGTTGTTTTCCATTCCATTGTTTATTGTCTTTTCAAGCCTTTGCTTGTTAACCAAGCAAACAGAAATGAAAGAGAGTGACACAAAGATCACTGGCGGCCATAATAGAGTGGAAGGTACTCTTGATTTTTTCAAGTGTGCAGCCTGCTTTTGCCATAAAAATTTTCACCGTAAGGAAATCGTTTCTAGAAAACCGACTCAAATCACCTACATTCCTCAACCAACTCCCATCTCGATGGTCTTTCAGACTAAGAATGGCTACCATCATGTGACTGGGCCATCCAGGGAGACCACAACTGCACCTGCTTTTCCTTCTGCTGTTATCCATGACGAGGCTCATTTTCATGATACTGATCCAATCAATGGTGGTAGTAGTGGTGGCGGAGAAGGTTCATTGAGCTCTAAGAAAAGGTTTAGGACTAAATTTAGTCATGAACAAAAAGAGCAGATGTTGGATTTTGCTGTTCAAATAGGTTGGAGGATTAAGAAACAAGATCAAAATGTTGTTGAGATGTTTTGCAACAAAATTGGGGTCAAGTTTCAAGTGTTTAAGGTTTGGATGCAAAACAATAGACACACCATTGGTAAAAAGCCTTAG 597 0.3987 MLFSIPLFIVFSSLCLLTKQTEMKESDTKITGGHNRVEGTLDFFKCAACFCHKNFHRKEIVSRKPTQITYIPQPTPISMVFQTKNGYHHVTGPSRETTTAPAFPSAVIHDEAHFHDTDPINGGSSGGGEGSLSSKKRFRTKFSHEQKEQMLDFAVQIGWRIKKQDQNVVEMFCNKIGVKFQVFKVWMQNNRHTIGKKP 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00711 198 MobiDBLite consensus disorder prediction 114 139 - -
Trre8g00711 198 Pfam ZF-HD protein dimerisation region 37 60 IPR006456 -
Trre8g00711 198 SUPERFAMILY Homeodomain-like 122 196 IPR009057 -
Trre8g00711 198 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 38 193 - -
Trre8g00711 198 FunFam Zinc-finger homeodomain protein 2 126 196 - -
Trre8g00711 198 Gene3D - 121 195 - -
Trre8g00711 198 NCBIfam homeobox domain, ZF-HD class 135 191 IPR006455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00711 Trre-Chr8 5067636 5068365 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00711 37 198 ZF-HD Transcription Factor Family AT5G65410 39.024 2.78e-33 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Trre8g00711 ZF-HD_dimer 8e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00711 - - tpra:123892177 296.204