Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00708 ATGGCTGAAGGTCTATTGTTTAACATGATCGAGAAGCTGATCGGGAAGCTGGGTTCAGTAGTTGTTGAAAGCTGGAACATGAGAGATGATCTTGAAAAGCTGGTGGAAAACATGTCTGAGATCAAGGCTGTGGTTTTGGATGCAGAGGAGCAGCTGAGCAACCAACAAGGCAACTATCATCAACTTCAACTTTGGTTGGCAAACCTCAAAGATGCTCTTGAGGATGCCGAAGACTTGCTTGATGAATTCAACACTGAAGAGTTAAGGCGACAGGTCATGACCAATGACAAGAAGGCTAAAAAGTTTCGCATATTCTTCTCGTCTTCTAACCAACTTCTCTTTTCTTTCAAAATGGCTGGGAAGATTCAGGAACTTGGTAAGAGAATTGCGGCCCTTAATGTTGATAAAAAAACTTTTCATTTTACAAATCGCACTCCTGAGCAACGAGTTTTCAGACAAAGAGAAACTCATTCCTTTGTTCCTGAAGAAGAAGTCATTGGAAGAGAGGAGGAGAAGACAAAGTTGCTAGAGTTGTTGTTTGACAATAGCATCAATGTGAAAGAGAATGTTTCAGTTATTTCCATAATTGGAGTTGGAGGACTTGGAAAGACTACGCTTGCTCAACTTGTATACCAAGACAAAAAAGTGCAACAACATTTTGAGTTGAAAAAATGGGTTTGTGTTTCCGAGGATTTCAATGTAAAAGGTATTGCTTCAAAGATCATTGAATCAAACTCTAATGTTGATCTGGAACAACTGCAGCAGGAACTTCGAAAGAAAGTTGAGGGAAAGAGATATTTGCTGGTCTTGGATGACATTTGGAATGAGAATCGTGATCTTTGGCTTGATTTGATGAGACTACTGAAAGTAGGTTCAAAAGGAAGTAAAATAATTATCACCACGAGAAGTGGGCAGGTAGCCAAGGTAAGTGGTTCATCTTCAATCAATCATTTAGAGGATCTCAATGAAGAAGAATCTTGGAAATTATTCAGTCGAGAAGCTTTTGTGAATGGAAAAGGACTAGAGAATAAGAATTTGGTGTCAATTGGCAAGGAAATCGTGAAAAAATGCTCAGGGGTTCCTCTCGCCATTACAACCATTGGAAACCTAATGTATTCATCCATGCAGACCGAGGAGGATTGGTTAACCTTCAAGAACAAAGATCTTATGAAAATTGATGAGCAATGCGATTTTTTAATTGAGAAGCAAATGTTGATTCGACTTTGGATTGCACAAGGATTTGTTCAGTCATCAGATGAAAATATAAGTTTAGAAGATATTGGTGAAAAGTACTTCATGGATTTTGTTCATAAGTCTTTCTTTCAAAATATCACCAAACAATTTGATGGCAAGTTAATGAAACGGGGAAAAATGTTGACAAAAAAACCCGTCATGTCTCTTTTTGCTATTATACATTTGATTCTTCCTGGCATCTTCCAACTTCTCTTCTCAATGCTTACAAACTAA 1467 0.3797 MAEGLLFNMIEKLIGKLGSVVVESWNMRDDLEKLVENMSEIKAVVLDAEEQLSNQQGNYHQLQLWLANLKDALEDAEDLLDEFNTEELRRQVMTNDKKAKKFRIFFSSSNQLLFSFKMAGKIQELGKRIAALNVDKKTFHFTNRTPEQRVFRQRETHSFVPEEEVIGREEEKTKLLELLFDNSINVKENVSVISIIGVGGLGKTTLAQLVYQDKKVQQHFELKKWVCVSEDFNVKGIASKIIESNSNVDLEQLQQELRKKVEGKRYLLVLDDIWNENRDLWLDLMRLLKVGSKGSKIIITTRSGQVAKVSGSSSINHLEDLNEEESWKLFSREAFVNGKGLENKNLVSIGKEIVKKCSGVPLAITTIGNLMYSSMQTEEDWLTFKNKDLMKIDEQCDFLIEKQMLIRLWIAQGFVQSSDENISLEDIGEKYFMDFVHKSFFQNITKQFDGKLMKRGKMLTKKPVMSLFAIIHLILPGIFQLLFSMLTN 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00708 488 Gene3D - 320 399 IPR042197 -
Trre8g00708 488 FunFam Probable disease resistance protein At1g61300 147 314 - -
Trre8g00708 488 Coils Coil 62 89 - -
Trre8g00708 488 Pfam Rx N-terminal domain 9 98 IPR041118 -
Trre8g00708 488 Coils Coil 31 51 - -
Trre8g00708 488 PANTHER DISEASE RESISTANCE PROTEIN RP 45 451 IPR044974 GO:0006952
Trre8g00708 488 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 148 395 IPR027417 -
Trre8g00708 488 Gene3D - 147 315 IPR027417 -
Trre8g00708 488 PRINTS Disease resistance protein signature 357 371 - -
Trre8g00708 488 PRINTS Disease resistance protein signature 260 274 - -
Trre8g00708 488 PRINTS Disease resistance protein signature 192 207 - -
Trre8g00708 488 Pfam NB-ARC domain 187 386 IPR002182 GO:0043531
Trre8g00708 488 Gene3D - 8 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00708 Trre-Chr8 5019364 5020993 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00708 173 384 WRKY Transcription Factor Family AT5G45050 27.313 3.60e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00708 - - mtr:11419276 598.201