Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00695 ATGGAAAGTAACGAATTGAAAGATGAACAACAGGAAATCTACGAATCCTTCGTATGCTGCGTTTGCCTGGATCTGTTATACAAGCCCATTGTGCTATCTTGTGGCCATGTATCATGTTTCTGGTGTGTCCATAAATCAATGAATAGTTCGTCCGAATCCCATTGTCCAATTTGTAGGCATTCATACTATCACTTTCCAACAATCTGTCAAATGCTTCACTTTTTGCTTCTTAAGACATATCCTGAAGCTTACAAGAGAAGGGAAAATCAGACACTTGAGGAAGAAGAGAAAAAGGATTGTTTCTCCCCTCAATTTATATGTGATCATCCTGAGAATTCGCCTACCAGTACTACCATAAATCAGACGTCTAACTCATGCAGCACAGAATCTTTTGAAAGTGTGGAGCAATCAGGGTCTTCAAATCATAATGGCGATGAAGGCATCATTTCTGAATACTCTTCTGAAAGGAAACCTCAAATTATAGGGACTCCTTCAGTTGACGGTAAAAGATTGCCTCAAAATGAGCACAATCAGAAACCAAAAATATTAGTTGCAGATTTAATGTGTCCAATGTGCAAACAAATGCTCATTCATCCTGTTGGTCTTAATTGTGGTCATGTATACTGTGAGACTTGTATCACCGACTTACCTCATGAGGTGCTTATATGTCAAGTTTGTCAAAGTCCACATCCCGGAGGATTTCCAAAAATTTGTTTGGCTCTTGACCAATTTTTAGAGGAGCAATTTCCAGAAGAGTACACACAGAGAAGAGATGCAATTCAACTTAGCCAAATCAAAGTCCATCCTGAAACCGCATCTTCTTGTTCGTTGTCCAAGGACGATGGAGAAAAGATAGCTTTGGGGTCTAATCCTGGATTGTTAGTTCACAGAGGAGCTGGTTGTGATTTTTGTGGGATGTACCCAATAATAGGGGACAGATATAGATGTGTTGACTGTACAGAGATTATCGGCTTTGATCTTTTTGTGGTGATTGCTATAAGAACCGCTCAAAGCGTCCAGGCCGATTCAACCAGAAGCACACCCCTGACCACAAGTTAG 1059 0.4032 MESNELKDEQQEIYESFVCCVCLDLLYKPIVLSCGHVSCFWCVHKSMNSSSESHCPICRHSYYHFPTICQMLHFLLLKTYPEAYKRRENQTLEEEEKKDCFSPQFICDHPENSPTSTTINQTSNSCSTESFESVEQSGSSNHNGDEGIISEYSSERKPQIIGTPSVDGKRLPQNEHNQKPKILVADLMCPMCKQMLIHPVGLNCGHVYCETCITDLPHEVLICQVCQSPHPGGFPKICLALDQFLEEQFPEEYTQRRDAIQLSQIKVHPETASSCSLSKDDGEKIALGSNPGLLVHRGAGCDFCGMYPIIGDRYRCVDCTEIIGFDLFVVIAIRTAQSVQADSTRSTPLTTS 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00695 352 MobiDBLite consensus disorder prediction 134 148 - -
Trre8g00695 352 SUPERFAMILY RING/U-box 290 327 - -
Trre8g00695 352 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 109 IPR013083 -
Trre8g00695 352 PANTHER UNCHARACTERIZED 7 327 - -
Trre8g00695 352 SUPERFAMILY RING/U-box 182 249 - -
Trre8g00695 352 ProSiteProfiles Zinc finger RING-type profile. 19 59 IPR001841 -
Trre8g00695 352 ProSitePatterns Zinc finger RING-type signature. 204 213 IPR017907 -
Trre8g00695 352 FunFam E3 ubiquitin-protein ligase PRT1 10 105 - -
Trre8g00695 352 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 167 258 IPR013083 -
Trre8g00695 352 MobiDBLite consensus disorder prediction 134 154 - -
Trre8g00695 352 Gene3D - 293 328 IPR043145 -
Trre8g00695 352 Pfam Zinc finger, C3HC4 type (RING finger) 19 58 - -
Trre8g00695 352 Pfam RING-type zinc-finger 189 213 IPR027370 -
Trre8g00695 352 ProSiteProfiles Zinc finger RING-type profile. 189 227 IPR001841 -
Trre8g00695 352 SMART ring_2 189 226 IPR001841 -
Trre8g00695 352 SMART ring_2 19 58 IPR001841 -
Trre8g00695 352 SUPERFAMILY RING/U-box 9 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00695 Trre-Chr8 4941376 4945817 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00695 1 59 C3H Transcription Factor Family AT1G74990 38.333 4.55e-09 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00695 - - tpra:123920334 634.024