Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00682 ATGCCTCTTTTCGCTAATGATCCATCGTCGTTTCCAGCCGCTCTTAAAATTCTTGCGGTTGATCACGATGTCGGCGCTCTATGCACTATCCAGGATATCTATAATGACTTACACTATCAAGTTATCACTTGTTGTAGTGTTTCTGATGCATGGAATTACCTGTTCAACCAAAATTTTGATATCATTCTTGTTGAAGCTTGTATGCCAAGCAATGATACTTTTGCTTTTGTTCGACAAATTACTTCACTTTTCAAACTTCCTGTTATCATGATGTCTCTTGATCAGACGCCGTCTTCCATTATGAATTCTATTGCCGAAGGGGCTTGCGCATACTGGTCCAAGCCATTGGATAAGAATCAATTCAAGACCATGTGGCAACATGTTGTACGAAACACTTTGAGCGAAAGTCAGCTACATGATGTACGGAAGGCTTTGAGCGAAAGTCATGAACTTCCTCAAACCTCGGAGGTTAAAGGCCATAAAAAACGAGGAAGAGAAGATGCTGATTTGCCAAAACAATCTCTTGCAAAGAAAAGCCGTTTGTCATGGACACCCGAATTGAACGAACAATTCTTATCGGCTGTGAATCAACTCGGGGTTAATAATGCAGTGCCGAAAGAAATTCTGAAACGGATGAACTTTCCTGGTTTGACCTCAGGGCATGTAGCTAGCCATTTACAGAAGTATAGAAACTATTTGAGAGGTGGAATCAGAAAGTCAAAGTTGAGTGGATTTGATTTTGAAGGTCACGACAAAATTCGTACACAACAACATTGCACTGAAATTGGCGAATCCAACATTTTTTTTTATTTATCTGACTTGTTCCCAGATCTTGTTGATGAATTTTAA 849 0.3969 MPLFANDPSSFPAALKILAVDHDVGALCTIQDIYNDLHYQVITCCSVSDAWNYLFNQNFDIILVEACMPSNDTFAFVRQITSLFKLPVIMMSLDQTPSSIMNSIAEGACAYWSKPLDKNQFKTMWQHVVRNTLSESQLHDVRKALSESHELPQTSEVKGHKKRGREDADLPKQSLAKKSRLSWTPELNEQFLSAVNQLGVNNAVPKEILKRMNFPGLTSGHVASHLQKYRNYLRGGIRKSKLSGFDFEGHDKIRTQQHCTEIGESNIFFYLSDLFPDLVDEF 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00682 282 PANTHER TWO-COMPONENT RESPONSE REGULATOR 16 231 IPR045279 GO:0009736
Trre8g00682 282 MobiDBLite consensus disorder prediction 144 174 - -
Trre8g00682 282 Gene3D - 14 143 - -
Trre8g00682 282 MobiDBLite consensus disorder prediction 144 176 - -
Trre8g00682 282 ProSiteProfiles Response regulatory domain profile. 16 129 IPR001789 GO:0000160
Trre8g00682 282 NCBIfam myb-like DNA-binding domain, SHAQKYF class 178 231 IPR006447 GO:0003677
Trre8g00682 282 SMART REC_2 15 125 IPR001789 GO:0000160
Trre8g00682 282 FunFam Two-component response regulator 174 235 - -
Trre8g00682 282 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 175 234 IPR017930 -
Trre8g00682 282 Pfam Response regulator receiver domain 17 124 IPR001789 GO:0000160
Trre8g00682 282 Pfam Myb-like DNA-binding domain 181 230 IPR001005 -
Trre8g00682 282 SUPERFAMILY Homeodomain-like 176 234 IPR009057 -
Trre8g00682 282 SUPERFAMILY CheY-like 15 146 IPR011006 -
Trre8g00682 282 Gene3D - 175 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00682 Trre-Chr8 4878941 4880281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00682 11 234 Response Regulator Gene Family AT2G25180 34.310 7.29e-36 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Trre8g00682 Response_reg 7.3e-12 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00682 - K14491 tpra:123923208 392.504