Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00675 ATGGAACGTCTTTTCGCTAACCTTCCATCATCGTTTCCAGCCGGTCTTAAAATTCTTGCAGTCGATCACCATGTCGGCGCTCTATGCACTATCCAAGATATCTGCAATGACTTACACTATCAAGTTATCACTTGTTGTAGTGTTTCTCATGCATGGAATTACTTGTTCAACCAAAATTTTGATATCATTCTCATTGAAGCTTCTATGCCAAGCAATGATACTTTTGCTTTTGTTCGACAAATTACTTCACTTTTCAAACTCCCTGTCATCATGATGTCTCTTGATCCCACACTGTCTTCTGTTATGAATTCTATTGCGGAAGGGGCTTGCGCATACTGGTCCAAGCCATTGGATGAGAACCAATTCAAGAACATGTGGCAGCATGTTGTACGAAACACTTTGAGTGAAAGTCAGCTCCATGTTGTACGAAAGGCTTTGAGCGAAAATCATGAACTTCCTCAAACCTCGGAGGTTAAAGGCCATAAAAAAAGAGGAAGAGAAGATGTTGATGTACCAAAACCACCTCTTGCAAAGAAAAGCCGTTTGTCATGGACACCTGAATTGCAGGAACAATTCTTATCGGCTGTGAATCAACTCGGGGTTAATAATGCAGTGCCGAAAGAAATTCTGAAACGCATGAACTTTCCCGGTTTGACATCAGGGCATGTAGCTAGCCATTTACAGAAGTATAGAAACTATTTGAGAGGTGGAATCAGAAAGTCAAAGAAGTTGAGTGGATTTGATTTTGAAGGTCACGACAAAATTCGTACACAACAACATTACACTGAAATCGTCAAATCCAACATTTTTTCTGATTTATCTGACTTGTTCCCAGATCTTGTTGATGAGTTTTAA 855 0.3988 MERLFANLPSSFPAGLKILAVDHHVGALCTIQDICNDLHYQVITCCSVSHAWNYLFNQNFDIILIEASMPSNDTFAFVRQITSLFKLPVIMMSLDPTLSSVMNSIAEGACAYWSKPLDENQFKNMWQHVVRNTLSESQLHVVRKALSENHELPQTSEVKGHKKRGREDVDVPKPPLAKKSRLSWTPELQEQFLSAVNQLGVNNAVPKEILKRMNFPGLTSGHVASHLQKYRNYLRGGIRKSKKLSGFDFEGHDKIRTQQHYTEIVKSNIFSDLSDLFPDLVDEF 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00675 284 Pfam Myb-like DNA-binding domain 182 231 IPR001005 -
Trre8g00675 284 SUPERFAMILY CheY-like 15 150 IPR011006 -
Trre8g00675 284 SMART REC_2 16 126 IPR001789 GO:0000160
Trre8g00675 284 MobiDBLite consensus disorder prediction 150 176 - -
Trre8g00675 284 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 176 235 IPR017930 -
Trre8g00675 284 MobiDBLite consensus disorder prediction 154 175 - -
Trre8g00675 284 NCBIfam myb-like DNA-binding domain, SHAQKYF class 179 232 IPR006447 GO:0003677
Trre8g00675 284 Gene3D - 176 236 - -
Trre8g00675 284 SUPERFAMILY Homeodomain-like 177 235 IPR009057 -
Trre8g00675 284 Gene3D - 16 144 - -
Trre8g00675 284 FunFam Two-component response regulator 176 236 - -
Trre8g00675 284 Pfam Response regulator receiver domain 18 124 IPR001789 GO:0000160
Trre8g00675 284 PANTHER TWO-COMPONENT RESPONSE REGULATOR 17 236 IPR045279 GO:0009736
Trre8g00675 284 ProSiteProfiles Response regulatory domain profile. 17 130 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00675 Trre-Chr8 4823147 4824547 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00675 12 235 Response Regulator Gene Family AT4G31920 36.522 4.13e-35 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Trre8g00675 Response_reg 5.8e-12 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00675 - - tpra:123923208 386.726