Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00665 ATGATGTTGAATCGTTCGTCAAATGTTCCGGCTGAAGCCGGTGGTTGTTCAAATGAAGAACTATGGAAAGCATGTGCTGGACCATTGGTGGATGTTCCTCGTGCTGGTCAAAGGGTTTACTATTTCCCTCAAGGACACATGGAGCAATTAGAGGCTTCTACTAATCAAGAACTGAATCAGAATATCCCTTTGTTGAAACTTCCTACACAGATCCTTTGTCGCATCGTGAATATGAATTTATTGGCTGAACAAGAAACGGACGAGGTTTATGCACAGATAACTTTGGTACCGGAACCAAATCAAGATGAGCCTACAATCCCTGACCCGGTAAACGATGAACCTCCGAGGCCGAAAATTCACTCATTCTGCAAGATCTTAACTGCTTCGGATACCAGCACACATGGTGGCTTCTCTGTTCTAAGAAAACATGCCACAGAATGCCTTCCTCCTTTGGATATGTCACAACCAACACCAACTCAAGAATTGGTTGCTAAGGATCTTCATGGTTATGAATGGCGCTTTAAGCATATATTTAGAGGTCAGCCGCGCAGACACCTACTCACAACTGGATGGAGTACTTTTGTGACTTCTAAAAGATTAGTTGCTGGAGATACCTTTGTGTTCTTGAGAGGGGAAAACGGGGAATTACGTGTTGGAGTGAGGCGTCTTGCTCGTCAGGCAAGTAACATGCCATCGTCTGTGCTTTCTAGCCAAAGCATGCACCTTGGAGTTCTTGCAACTGCCTCCCATGCTGTTGCATCGCAGACTCTTTTTGTTGTATATTATAAGCCGAGGACGAGCCAGTTCCTCGTAAGCGTAAACAAGTACTTGGCAGCTGTGAATAATAAGTTTACTGTCGGCATGAGGTTCAAGATGAAGTTTGAGAGCGATGATTCTGCTGAGTCTGACAAAAGATTTTCCGGTACCATAGTTGGAGTGGAAGATATGTCTCCCCATTGGCCGAATTCAAAATGGCGATCACTTAAGGTTCAATGGGATGAACCTTCAGCTATTGCAAGACCTGACAGGGTTTCACCATGGGAGATAGAACCGTTTGTTTCCTCAGCTTCTACATCCTCAGTTCAACCAACGGTTGTGAAGACTAAAAGGCCTCGACCACTGAGTGAAATTCCCGACGTTGACACAACATCGGCTGCCTCTGTTTACTGGGATGCTAGACTGACGCAGACTGATAAGACACAACGTAGCGTTCTAGCTGAAAGCCAAAAAAGTGATACTGGTATGTGGCATCATAAGAAAACCGATATTATGAATAGTAAAAGCAACAACAGCACTTTATTTAGAAATCATACAGAAGGAAGTTGGCTATCTTCTCCCCGTTCTAGCTGTCCGTCTCATGTGCTTCATGACACATCTATAGTAAACGTTGATAAGAACAACAAAGCCGAGACTACTACAAGTTATCGGTTGTTTGGAATCGATCTTATTGATCATTCCAAAAATTCGTCTGCCCGTAAGTCTGAAGTTACCACTGGAGTTACCACTGAAGTTAGTACCAGTACTTTGTCTAGCACCGATACTGCCCGTAAGTCTGACATCTCAAAGGGTGCTTCTATGGAGAAGAAATTAGAATTGCAACTAGTATCACCGAAGGAGACTCAAAGCAAGCAGATTTGTAGCAGAAGTCGCACCAAGGTTCAAATGCAGGGTGTTGCAGTGGGACGCGCTGTGGATTTGGCAACATTGAATGGTTATGATCAACTTATTGGCGAATTGGAAGAGTTGTTTGACATCAAGGGACAGCTTCAACATCGGAATAAATGGGAAATTGTCTTCACTGATGATGAAGGAGATATGATGCTCGTGGGAGATGATCCATGGCCTGAATTCTGTAATATGGTGAGACGAATTTTCATATGTTCAAGCAATGACGTGAAGAAGATGAAGTCCGGAAGTAAGCTTCCAATTAATGCTCCCATCGAGGAAGGGACTGTAATAAGTCCCGACACAAGTGAAACATGA 1983 0.4372 MMLNRSSNVPAEAGGCSNEELWKACAGPLVDVPRAGQRVYYFPQGHMEQLEASTNQELNQNIPLLKLPTQILCRIVNMNLLAEQETDEVYAQITLVPEPNQDEPTIPDPVNDEPPRPKIHSFCKILTASDTSTHGGFSVLRKHATECLPPLDMSQPTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGENGELRVGVRRLARQASNMPSSVLSSQSMHLGVLATASHAVASQTLFVVYYKPRTSQFLVSVNKYLAAVNNKFTVGMRFKMKFESDDSAESDKRFSGTIVGVEDMSPHWPNSKWRSLKVQWDEPSAIARPDRVSPWEIEPFVSSASTSSVQPTVVKTKRPRPLSEIPDVDTTSAASVYWDARLTQTDKTQRSVLAESQKSDTGMWHHKKTDIMNSKSNNSTLFRNHTEGSWLSSPRSSCPSHVLHDTSIVNVDKNNKAETTTSYRLFGIDLIDHSKNSSARKSEVTTGVTTEVSTSTLSSTDTARKSDISKGASMEKKLELQLVSPKETQSKQICSRSRTKVQMQGVAVGRAVDLATLNGYDQLIGELEELFDIKGQLQHRNKWEIVFTDDEGDMMLVGDDPWPEFCNMVRRIFICSSNDVKKMKSGSKLPINAPIEEGTVISPDTSET 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00665 660 Pfam B3 DNA binding domain 122 222 IPR003340 GO:0003677
Trre8g00665 660 Pfam Auxin response factor 248 329 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Trre8g00665 660 FunFam Auxin response factor 283 356 - -
Trre8g00665 660 FunFam Auxin response factor 543 636 - -
Trre8g00665 660 Pfam AUX/IAA family 538 632 IPR033389 -
Trre8g00665 660 ProSiteProfiles PB1 domain profile. 548 629 IPR000270 GO:0005515
Trre8g00665 660 SUPERFAMILY CAD & PB1 domains 549 624 - -
Trre8g00665 660 Gene3D - 544 636 - -
Trre8g00665 660 SUPERFAMILY DNA-binding pseudobarrel domain 113 251 IPR015300 -
Trre8g00665 660 Gene3D - 283 358 - -
Trre8g00665 660 ProSiteProfiles B3 DNA-binding domain profile. 122 224 IPR003340 GO:0003677
Trre8g00665 660 SMART B3_2 122 224 IPR003340 GO:0003677
Trre8g00665 660 FunFam Auxin response factor 120 224 - -
Trre8g00665 660 Gene3D - 119 223 IPR015300 -
Trre8g00665 660 CDD B3_DNA 120 222 IPR003340 GO:0003677
Trre8g00665 660 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 636 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00665 Trre-Chr8 4734823 4738708 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00665 13 641 B3 DNA Binding Superfamily AT4G23980 60.502 0.0 721
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Trre8g00665 AUX_IAA 3.9e-10 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00665 K14486 - gmx:100779003 1005.74