Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00645 ATGGAACAGGATCAATGTTGGATACAAACAAAGAGAAAGTACTCAATGAGTAATTCAAATCTTGTTAACCCTTCTTCTTCTTCTTCTTGTTATGGTGATTCATGGGAAGAACAAGCTTTTGCTGAAGATGCAGCTGGAGCTTCACTTGGTGGATGTATATGGCCACCAAGATCATATTCTTGTAGCTTTTGTAGAAGAGAGTTTAGGTCAGCACAAGCATTAGGTGGTCATATGAATGTTCATAGAAAAGATAGAGCAAGACTAAAAGAATCTTCTAGTCCACAAAATGAAAAAATTCTTTATCATCATGAACTTGAAAATCATCTTCAAAAGCCAATTCAAAGTTCTAATTCTTTGGCTTATAATAACCTATTCCCTAATTCTTCTCTTTGTGGTTTGGTTTATAAAACTAACCCTAATTATGATCTTGATCATCATTTTGTTGCTTCAACTTCATCACCCTCACCTTCTAAGGTTTTATTAAGAGATGAAACCCTAATTCCATTTTATGATTCTTCTATTCCTCATAAGATGATTTCTCCTCATAATTCTTCTGAATCGTGGCGAAATTTATCTGGAGATGATAGATTATTCTCAACAAATTTTCAACATGAAGTTGATAATATTGGTGAAAAAGTCTCCAAGGGATTATTGGATTTTAGGTTTAGAGGTAAAGGGGGTAATAATGATGATCATGAAAGTGATGTAGCTATGAGCTTGAATTTGGTTTTATGTAGAACTCATCCATTTGTGGAATTTGAAGGTGCTAAGGAGGAGGAAGAAGATTTCAATTGCAAGAAGAGGAAAAAAATAGATTCTTCCTCAAATTTATTATTCTCAAAGTCAAGCTCTTTTGATAGAGAACAACATATGCAAGCAAACATGTTTGAGTTTAACCCTAATTCCATTGAAGAGCTAGATCTGGAGTTAAGACTTGGTTCAAAGTCCAAGGTATAG 957 0.3386 MEQDQCWIQTKRKYSMSNSNLVNPSSSSSCYGDSWEEQAFAEDAAGASLGGCIWPPRSYSCSFCRREFRSAQALGGHMNVHRKDRARLKESSSPQNEKILYHHELENHLQKPIQSSNSLAYNNLFPNSSLCGLVYKTNPNYDLDHHFVASTSSPSPSKVLLRDETLIPFYDSSIPHKMISPHNSSESWRNLSGDDRLFSTNFQHEVDNIGEKVSKGLLDFRFRGKGGNNDDHESDVAMSLNLVLCRTHPFVEFEGAKEEEEDFNCKKRKKIDSSSNLLFSKSSSFDREQHMQANMFEFNPNSIEELDLELRLGSKSKV 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00645 318 SUPERFAMILY beta-beta-alpha zinc fingers 56 85 IPR036236 -
Trre8g00645 318 Gene3D Classic Zinc Finger 56 117 - -
Trre8g00645 318 PANTHER OS07G0101800 PROTEIN 31 315 - -
Trre8g00645 318 Pfam C2H2-type zinc finger 59 83 - -
Trre8g00645 318 SMART c2h2final6 59 81 IPR013087 -
Trre8g00645 318 ProSitePatterns Zinc finger C2H2 type domain signature. 61 81 IPR013087 -
Trre8g00645 318 ProSiteProfiles Zinc finger C2H2 type domain profile. 59 86 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00645 Trre-Chr8 4626703 4627659 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00645 34 314 C2H2 Transcription Factor Family AT2G37740 34.437 4.51e-27 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre8g00645 zf-C2H2_6 1.1e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00645 - - cam:101506400 390.578