Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00628 ATGAGTTGGGTGGCAGCGATCAGTCATAATACAGCATACATATATGAAGGACCAAAACATTTCAAGGTCAAATACAGGAGCACAAGTGAACATATCGAAAATTTAGTTAAACGTGCTACTCGTGTGATAAGGGATAAGAGAGCCTTTTTCAATGATTTATATACAGAGAGCATACATTCTCGTGCGCAAGATGTGATTCAATTATTGAAACAATCAAAATGCCCCCTCCTACTAGGGATATGGGGGATGCAAGGGATTGGTAAAACAACCATTGTGAATGCCATTTATGCTCAGATTGGTCCCTATTTTGAGAATACGTGCTTTGTCGAACATGTCAGGAGTTTAGTTAAAAATAAAACTCTAGTTTCTATACAAGAGAAACTTCTTATTGAGATCGACAAAGCAACTGAAATAAATATATCTACAATTGAGTCGGGAAAATTGATTTTAAAAGAAAGACTTCAAGGTAAAAGGGTACTTCTTGTACTTGACGATGTTGATAAATTGGAGCAGCTAAGTGCTTTGTGTGGAAGTCGTGAATGGTTCGGTGAAGGTAGCAAAATAATCATCACGACAAGAGATAGGAAACTACTTAAGGAGCACGGAGTTGACCATATATACAGAGTGAAAGAACTGGACGAAAATGAATCACTTGATCTTTTTAATTGGAAAGCATTCAGGCAAGCAACTACCCGAAAAGGTTTTGTTGAACTTTCCAGACAAATTGTTGCTTATTCTGGGGGATTGCCTCTTGCTCTTAAAGTTGTTGGGTCCTCATTGTATCGGAGGTCATCAGTACATGCCTGGATGTCTGAGTTGGATAAGCTCGAAGTACTTCCCCAAAAAAATGTACAAAGAATGCTAGAAGATAGTGTTAATAATTTGAGTGATGAAGAGAAACAAATCTTCCTTGATATAGCATATTTCTTTATCGGGGTGAACCAAAAAGATGTACTCCAAGCATTAAATGGGTCAACACAACGCGCAACTCTTCAAATAAGTCTCCTTAAAGACAAGAGCCTTTTAACCATCGATGAGAATAACAAGCTTCAAATGCATGTTTTGCTACAAGCCACAGCAAGAGATATCATTAGGAATGAATCAAGTAATAAGACTAATCAGGCAAAGATGTACGACGTGTTTTTGAGTTTCAGTGGGAAAGATAGTCGTGCAAAGTTCATGTCACATCTCTATTCCTCTCTTCAAAATGCAGGGATTTATACTTTCAGAGACGATGACGAGATTCAGCGAGGAGATCAGATATCAATCTCACTGTTGCGAGCAATCGGACAGTCTAGAATATCTATCGTTGTTTTGTCTACAAATTATGCTAATTCAAGATGGTGTATGTTAGAGTTGGAGAAGATCATGGAAATTGGCAGAATCCAGGGTCTGGTGGTTGTGCCAGTATTCTATGAGGTGGATCCCTCAAATGTACGTCATCAGGAAGGTCAGTTTGGGAAAGCTTTTGAACATCTTATATCAAAAATTTCAGTGGATGAATACAGAAAGAGTAATTGGCGAAGAGAACTCTTTGATATTGGTGGTACAGCAGGGTTTGTCCTCATAAATTCCAGGAATGAAAGTGCAGATATCAAGAATATTGTTGAACATGTCACCCGTTTGCTAGATAGGACAGAGTTATTTGTTGCTGAACATCCAGTGGGTGTAGAATCTCGTGCGGAAGCTGCGATTAAGCGACTGAACATCCAAAAATCAGAAGATGTTTTAATTCTAGGAATATGGGGAATGGGAGGTGTTGGCAAAACAACCATTGCCAAAGCCATATATAATCAAATTGGGAACAAATTTGAGGGAAGGAGCTTCATTCTGAATATAAGGGAATTTTGGGAGAAAGATATTAATCTAGTTTCTCTGCAGCAACAGGTACTTTGTGATGTTTACAAAACTACGACCTTCAGGATACGTGACACAGAATCAGGGAAAAATATATTGAAGGAAAGACTTGCCCATAAAAGGGTACTTGTTGTGTTTGATGATGTGAATGAACTAGACCAAGTAAAGGCTTTGTGTGGAAGCCGTGAATGGTTTGGTCCTGGAAGTAGAATAATAATCACAACAAGAGATATGGATCTTCTTAGATTTTGTGGAGTTGAATCAGTGTATACAGTAGAAGAAATGAACAAAAGTGAATCTCTTGAGCTTTTCAGCCGGCATGCATTCAAGCAACCAAGTCCGGCAGAGGGTTATGCTACACATTCTGCAGATGTTATTGCTTATTCAGGGAAATTGCCACTAGCACTTGAAGTCCTTGGGTCCTATTTGTCTAATTGTGAAATAACAGAGTGGCAGAAAGTTTTGGAGAAACTCAAATGTATTCCCCATGATCAAGTACAGAAGAAGCTAAAAGTAAGCTTTGATGGTTTAAAAGATGTTACATTTAAACAAATATTCCTTGATATTGCTTGTTTCCTTATTGGGATGGACCGAAATGATGCAATACGAATATTAAATGGGTGTGGGTTTTTTGCTGATGTTGGAATTAAAGTCCTTGTAGAGCGAAGTCTTGTAACTGTTGACAATCGGAACAAGCTTCGAATGCATGATTTGTTAAGAGATATGGGAAGACAAATCATTTATGAGGAATCACCGACAGATCCTGAGAAGCGCAGTAGGTTGTGGCACCATGAGGAAGTGTTTGATATGTTAGCAAAGCATAAGGGAACAAAAGCTGTCAAGGGACTGGCTTTGGAGTTTCCAAGAAAAGATTGTCTGGAAACCAAAGCATTTAAGAAAATGAATAAACTCAGATTGCTTCGCCTCGCTAGGGTGAAGCTTAAGGGAGATTTTAAATACCTTTCAGGAGATCTTAGGTGGTTATACTGGCATGGATTTCCATTAACTTGCATTCCTGCAGAATTTCAGCAAGGAAGTCTAGTTGCAATTGAATTAAAATATAGTAAGCTCAAACAAATTTGGAACAAGAGCCAGATGCTAGAGAATCTATAA 2970 0.3832 MSWVAAISHNTAYIYEGPKHFKVKYRSTSEHIENLVKRATRVIRDKRAFFNDLYTESIHSRAQDVIQLLKQSKCPLLLGIWGMQGIGKTTIVNAIYAQIGPYFENTCFVEHVRSLVKNKTLVSIQEKLLIEIDKATEINISTIESGKLILKERLQGKRVLLVLDDVDKLEQLSALCGSREWFGEGSKIIITTRDRKLLKEHGVDHIYRVKELDENESLDLFNWKAFRQATTRKGFVELSRQIVAYSGGLPLALKVVGSSLYRRSSVHAWMSELDKLEVLPQKNVQRMLEDSVNNLSDEEKQIFLDIAYFFIGVNQKDVLQALNGSTQRATLQISLLKDKSLLTIDENNKLQMHVLLQATARDIIRNESSNKTNQAKMYDVFLSFSGKDSRAKFMSHLYSSLQNAGIYTFRDDDEIQRGDQISISLLRAIGQSRISIVVLSTNYANSRWCMLELEKIMEIGRIQGLVVVPVFYEVDPSNVRHQEGQFGKAFEHLISKISVDEYRKSNWRRELFDIGGTAGFVLINSRNESADIKNIVEHVTRLLDRTELFVAEHPVGVESRAEAAIKRLNIQKSEDVLILGIWGMGGVGKTTIAKAIYNQIGNKFEGRSFILNIREFWEKDINLVSLQQQVLCDVYKTTTFRIRDTESGKNILKERLAHKRVLVVFDDVNELDQVKALCGSREWFGPGSRIIITTRDMDLLRFCGVESVYTVEEMNKSESLELFSRHAFKQPSPAEGYATHSADVIAYSGKLPLALEVLGSYLSNCEITEWQKVLEKLKCIPHDQVQKKLKVSFDGLKDVTFKQIFLDIACFLIGMDRNDAIRILNGCGFFADVGIKVLVERSLVTVDNRNKLRMHDLLRDMGRQIIYEESPTDPEKRSRLWHHEEVFDMLAKHKGTKAVKGLALEFPRKDCLETKAFKKMNKLRLLRLARVKLKGDFKYLSGDLRWLYWHGFPLTCIPAEFQQGSLVAIELKYSKLKQIWNKSQMLENL 989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00628 989 Gene3D - 550 710 IPR027417 -
Trre8g00628 989 PRINTS Disease resistance protein signature 748 762 - -
Trre8g00628 989 PRINTS Disease resistance protein signature 918 934 - -
Trre8g00628 989 PRINTS Disease resistance protein signature 578 593 - -
Trre8g00628 989 PRINTS Disease resistance protein signature 655 669 - -
Trre8g00628 989 Pfam NB-ARC domain 65 295 IPR002182 GO:0043531
Trre8g00628 989 Pfam NB-ARC domain 559 785 IPR002182 GO:0043531
Trre8g00628 989 Gene3D - 372 549 IPR035897 -
Trre8g00628 989 ProSiteProfiles TIR domain profile. 376 543 IPR000157 GO:0007165
Trre8g00628 989 SUPERFAMILY "Winged helix" DNA-binding domain 784 890 IPR036390 -
Trre8g00628 989 Pfam TIR domain 378 540 IPR000157 GO:0007165
Trre8g00628 989 Gene3D - 713 797 IPR042197 -
Trre8g00628 989 SMART till_3 377 517 IPR000157 GO:0007165
Trre8g00628 989 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 541 808 IPR027417 -
Trre8g00628 989 SUPERFAMILY Toll/Interleukin receptor TIR domain 369 519 IPR035897 -
Trre8g00628 989 SUPERFAMILY "Winged helix" DNA-binding domain 283 368 IPR036390 -
Trre8g00628 989 Gene3D - 45 205 IPR027417 -
Trre8g00628 989 FunFam Disease resistance protein (TIR-NBS-LRR class) 374 545 - -
Trre8g00628 989 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 61 306 IPR027417 -
Trre8g00628 989 SMART AAA_5 575 712 IPR003593 GO:0016887
Trre8g00628 989 SMART AAA_5 74 212 IPR003593 GO:0016887
Trre8g00628 989 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 378 982 IPR044974 GO:0006952
Trre8g00628 989 SUPERFAMILY L domain-like 850 989 - -
Trre8g00628 989 Gene3D - 211 300 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00628 Trre-Chr8 4537095 4542000 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00628 331 980 WRKY Transcription Factor Family AT4G12020 29.161 1.23e-70 255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00628 - - mtr:11411578 1414.44