Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00624 ATGTCTTCCTTCACTTCCTTCTCCTCCGAAAACTGCCAGGAATTTGAATCCAGATATACTACTGATACAAAGAAGAGGCGTTATAATGTGTTCTTGAGTTTCTGTGCTCGAGACGCGGGTACTTTTCCTTCGCGTCTCGATATGGCTCTTAGTTCTGAAGCTGGAATCGTTGTTTTTGGGGATGTTGAGAGGGTTCAACATGGAGAATGGGAAAAGTTGGCGCTGGATGTAATTGAAGACTGTAAAATTGCTATAGTCATATTTTCAACTAATTATGTTAATTCGAGTTTGTATTTAAAAGAATTGGAGAAAATAACCGAGTGTTGCCGAACCTCAGATTTGACTGTTCTGCCTGTGTTCTATCATAGCGTCCACTCTTCCTACGGATGTTCAGAGGGAGGTATGCTCGAAGGAGGTGCTTTTCATTATTTTCTTGATAGAATGATGGTGGAGGGAATCACTGAAGAGGAAGACAAGTTCATCACTTGGGTAACAGGGATCACTAAAGCTACCAAATATTTAGGACCAAGTTATCTCGTACACAAACCCATATTCAAGTATGAGGGTGAATATATTAAGGATATAGTTCAACATGTTATGCGTGTGCTAAACAAGAGAGACTTGTTTGCGGCTTCCTATACACCTAGTGTAAAATCCGTTGCGCAAGATATGATTCAACTATTGAAACAATCAAAATCTCCTTTCCTACTGGGGATATGGGGGATGACAGGGATCGGTAAATCAACCATTGCCACGGCTATTTATAATCAAATTGGTCTGTTTTTTGAGCACAAATGCTTCCTCGAAAACGTTGGGGGAGTTTGGGAAACAAATAGTGGCCAACTTTCATTACAAGAGGAACTTCTTTTTTATATTGACGGACCAACTGAAATAAAGATACCTACAATTGAATCAGGAACAGTGATGATAAAAGAAAGACTTCAACATAAAAGGGTACTTCTTTTACTTGACAATGTTGATAAGTTGGAGCAGCTGAATGCGTTGTGCAGAAGTCGGGATTGGTTTGGAGCAGGTAGCAAAATAATCATCACGACAAAAAATAGACGTCTACTCAGGGAGCATGGAGTTGACCATATACACAAGGTGAAAGAACTGAACGAAAGTGAATCCCTTGATGTTTTAAAATGGAGTGCATTCAGCCGAGCAACATCTCCTCGAGCGAATTTTGGTGAACTTTCTCGACAGTTAGTTGCTTATTCTGGGGGATGGCCTCTTGCTCTTAAAGAACTTGGGAAGTTTTTGCATGGAAAGGATGTACCTGAGTGGAAAGGTGTGTTGAGGAGTCTCCAAAGATTTTCCATTCCAGCTCCACGACTACTAGAAGCTCTAGAAAAGAGTTTTAGCGATTTGAGTGATGAAGAGAAACACATATTCCTTGATATAGCGTGTTTCTTTAATAGTATGAACCAAAATGATGTACTTCAAACATTAAATAGGCCAACACAATCGGAAGGGTTTCAAATAAATCTCCTTGAAGACAAGAGCTTTGTTACCATTGATGAGAATAACAACCTTGAAATGCATGTTCTGCTACAAGCCATGGCAAGAGATATCATAAAGAGAGACTCAAGTAGTAAGACTGATCAGCCAAAGATGTACGATGTATTCTTGAGTTTTAGAGGGGAAGACAATCGGGCAAAGTTCGTGTCACATCTTTATTCCTCTCTTCAAAATGCGGGAATTCATGTTTTCAGAGATGAGGATGAGATTCAACGAGGAGATCTTATCTCAGTCTCACTGTTGCAAGCAATTGGACGGTCTAGAATTTCTATCGTTGTTTTGTCTATAAATTATGCTAATTCAAGATGGTGTATGCTAGAGTTGGAGAAGATCATGGAAATTGGCAGAGTCAGAGGTCTGGTGGTTGTGCCAGTGTTCTATGAGGTAGATCCCTCAGAAGTACGTCATCAGAAAGGTCGGTTTGGAAAGGCTTTTGAAGATCTCATATCAACAATCTCAGTGGACGAATCCACTAAGGGTAATTGGAGAAGAGAACTCCTTGATATTGGTGGCATAGCAGGGTTTGTACTCATAGATTCCAGGAATGAAAGTGATGATATCAAGAATATTGTTGAACATGTTACGCATTTGCTAGATAGGACAGAGTTATTTGTTGCTGAACATCCAGTGGGAATTGAATCTCGTGTGCAAGCTGCAACTGAGCTATTAAACATCCAAAAGGCAGAAGATGTTTTAATTCTAGGGATATGGGGCATGGGGGGTATGGGAAAAACAACCATTGCCAAAGCTATTTATAATCAAGTTGGGAGCAAATTTGAGAGAAGGAGCTTCCTTCTGGATATTAGGGAATTTTGGGAGACAGATACTAATAAAGTTTCTCTACAGCAACAGGTACTTTGTGATGTTTACAAAACAACATCATTCAAGATACGTGACATCGAATCGGGGAAAAATATATTGAAGGAAAGACTTGCCCGGAACAAGGTACTTCTTGTGCTTGATGATGTGAATGAATTGGACCAGCTAATGGCTTTGTGTGGAAGCCGCGTATGA 2535 0.4 MSSFTSFSSENCQEFESRYTTDTKKRRYNVFLSFCARDAGTFPSRLDMALSSEAGIVVFGDVERVQHGEWEKLALDVIEDCKIAIVIFSTNYVNSSLYLKELEKITECCRTSDLTVLPVFYHSVHSSYGCSEGGMLEGGAFHYFLDRMMVEGITEEEDKFITWVTGITKATKYLGPSYLVHKPIFKYEGEYIKDIVQHVMRVLNKRDLFAASYTPSVKSVAQDMIQLLKQSKSPFLLGIWGMTGIGKSTIATAIYNQIGLFFEHKCFLENVGGVWETNSGQLSLQEELLFYIDGPTEIKIPTIESGTVMIKERLQHKRVLLLLDNVDKLEQLNALCRSRDWFGAGSKIIITTKNRRLLREHGVDHIHKVKELNESESLDVLKWSAFSRATSPRANFGELSRQLVAYSGGWPLALKELGKFLHGKDVPEWKGVLRSLQRFSIPAPRLLEALEKSFSDLSDEEKHIFLDIACFFNSMNQNDVLQTLNRPTQSEGFQINLLEDKSFVTIDENNNLEMHVLLQAMARDIIKRDSSSKTDQPKMYDVFLSFRGEDNRAKFVSHLYSSLQNAGIHVFRDEDEIQRGDLISVSLLQAIGRSRISIVVLSINYANSRWCMLELEKIMEIGRVRGLVVVPVFYEVDPSEVRHQKGRFGKAFEDLISTISVDESTKGNWRRELLDIGGIAGFVLIDSRNESDDIKNIVEHVTHLLDRTELFVAEHPVGIESRVQAATELLNIQKAEDVLILGIWGMGGMGKTTIAKAIYNQVGSKFERRSFLLDIREFWETDTNKVSLQQQVLCDVYKTTSFKIRDIESGKNILKERLARNKVLLVLDDVNELDQLMALCGSRV 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00624 844 SUPERFAMILY Toll/Interleukin receptor TIR domain 531 681 IPR035897 -
Trre8g00624 844 SMART till_3 27 177 IPR000157 GO:0007165
Trre8g00624 844 SMART till_3 539 679 IPR000157 GO:0007165
Trre8g00624 844 ProSiteProfiles TIR domain profile. 538 705 IPR000157 GO:0007165
Trre8g00624 844 Pfam NB-ARC domain 226 441 IPR002182 GO:0043531
Trre8g00624 844 Pfam NB-ARC domain 722 836 IPR002182 GO:0043531
Trre8g00624 844 ProSiteProfiles TIR domain profile. 26 149 IPR000157 GO:0007165
Trre8g00624 844 Pfam TIR domain 540 702 IPR000157 GO:0007165
Trre8g00624 844 Pfam TIR domain 28 199 IPR000157 GO:0007165
Trre8g00624 844 Gene3D - 534 709 IPR035897 -
Trre8g00624 844 Gene3D - 21 207 IPR035897 -
Trre8g00624 844 Gene3D - 371 458 IPR042197 -
Trre8g00624 844 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 28 531 IPR044974 GO:0006952
Trre8g00624 844 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 702 839 IPR027417 -
Trre8g00624 844 SUPERFAMILY "Winged helix" DNA-binding domain 447 530 IPR036390 -
Trre8g00624 844 SUPERFAMILY Toll/Interleukin receptor TIR domain 21 127 IPR035897 -
Trre8g00624 844 Gene3D - 710 844 IPR027417 -
Trre8g00624 844 SMART AAA_5 233 372 IPR003593 GO:0016887
Trre8g00624 844 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 220 468 IPR027417 -
Trre8g00624 844 FunFam Disease resistance protein (TIR-NBS-LRR class) 536 707 - -
Trre8g00624 844 Gene3D - 208 366 IPR027417 -
Trre8g00624 844 PRINTS Disease resistance protein signature 236 251 - -
Trre8g00624 844 PRINTS Disease resistance protein signature 407 421 - -
Trre8g00624 844 PRINTS Disease resistance protein signature 313 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00624 Trre-Chr8 4523951 4527853 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00624 503 832 WRKY Transcription Factor Family AT4G12020 26.946 9.08e-24 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00624 - - mtr:11411578 1073.54